Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025187 Sechium edule HOM05D008619 ORTHO05D000090 9.1e-81 305.4 240 100.0
ClCG09G008330 Citrullus lanatus HOM05D008619 ORTHO05D000090 4.0e-20 104.0 74 63.5
CsaV3_7G027920 Cucumis sativus L. HOM05D008619 ORTHO05D000090 4.9e-18 97.1 68 63.2
CsaV3_7G027720 Cucumis sativus L. HOM05D008619 ORTHO05D000090 1.9e-17 95.1 78 57.7
CsaV3_7G027280 Cucumis sativus L. HOM05D008619 ORTHO05D000090 9.3e-17 92.8 70 58.6
Sed0021875 Sechium edule HOM05D008619 ORTHO05D000090 3.5e-16 90.9 68 55.9
RcHm_v2.0_Chr6g0289221 Rosa chinensis HOM05D000162 ORTHO05D000090 6.0e-16 90.1 75 58.7
RcHm_v2.0_Chr6g0289191 Rosa chinensis HOM05D000162 ORTHO05D000090 7.8e-16 89.7 75 57.3
MELO3C028898.2 Cucumis melo HOM05D008619 ORTHO05D000090 2.3e-15 88.2 68 57.4
Sed0002057 Sechium edule HOM05D008619 ORTHO05D000090 2.3e-15 88.2 74 56.8
ClCG09G021760 Citrullus lanatus HOM05D008619 ORTHO05D000090 3.0e-15 87.8 87 51.7
Sed0010182 Sechium edule HOM05D008619 ORTHO05D000090 5.1e-15 87.0 68 60.3
FvH4_2g22260 Fragaria vesca HOM05D000162 ORTHO05D000090 6.6e-15 86.7 75 54.7
Prupe.8G230100 Prunus persica HOM05D008619 ORTHO05D000090 6.6e-15 86.7 75 58.7
Haze_24551 Corylus avellana HOM05D000162 ORTHO05D000090 1.9e-14 85.1 75 53.3
Sed0000927 Sechium edule HOM05D008619 ORTHO05D000090 4.3e-14 84.0 74 60.8
FAN24G2639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.6e-14 83.6 75 53.3
CsaV3_7G027260 Cucumis sativus L. HOM05D008619 ORTHO05D000090 7.3e-14 83.2 62 61.3
FAN27G0396 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.3e-14 83.2 75 52.0
ClCG00G006240 Citrullus lanatus HOM05D008619 ORTHO05D000090 1.1e-12 79.3 66 54.5
ClCG01G008120 Citrullus lanatus HOM05D008619 ORTHO05D000090 1.1e-12 79.3 66 54.5
Sed0005043 Sechium edule HOM05D008619 ORTHO05D000090 1.1e-12 79.3 60 61.7
MELO3C015722.2 Cucumis melo HOM05D008619 ORTHO05D025208 1.4e-12 79.0 59 57.6
MD05G1203800 Malus domestica HOM05D008619 ORTHO05D000090 1.4e-12 79.0 75 50.7
MELO3C012708.2 Cucumis melo HOM05D008619 ORTHO05D000090 3.1e-12 77.8 87 48.3
Sed0002269 Sechium edule HOM05D008619 ORTHO05D025208 4.0e-12 77.4 65 56.9
Sed0014539 Sechium edule HOM05D008619 ORTHO05D000090 4.0e-12 77.4 64 57.8
CsaV3_7G027240 Cucumis sativus L. HOM05D008619 ORTHO05D000090 5.3e-12 77.0 214 63.1
CsaV3_7G022190 Cucumis sativus L. HOM05D008619 ORTHO05D000090 6.9e-12 76.6 74 51.4
Thecc.01G265100 Theobroma cacao HOM05D008619 ORTHO05D000090 6.9e-12 76.6 75 48.0
Sed0014525 Sechium edule HOM05D008619 ORTHO05D000090 9.0e-12 76.3 67 55.2
GSVIVG01000757001 Vitis vinifera HOM05D000162 ORTHO05D000090 9.0e-12 76.3 221 51.1
Actinidia33760 Actinidia chinensis HOM05D000162 ORTHO05D000090 1.5e-11 75.5 75 48.0
CSS0034526 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 1.5e-11 75.5 75 46.7
Hma1.2p1_0172F.1_g076330 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 2.0e-11 75.1 81 45.7
QL04p081370 Quercus lobata HOM05D000162 ORTHO05D000090 2.0e-11 75.1 75 50.7
CSS0040127 Camellia sinensis var. sinensis HOM05D008619 ORTHO05D000090 2.6e-11 74.7 65 49.2
Lj1P60T47 Lonicera japonica HOM05D008619 ORTHO05D000090 7.6e-11 73.2 70 45.7
Sed0018285 Sechium edule HOM05D008619 ORTHO05D000090 7.6e-11 73.2 60 58.3
ClCG01G008220 Citrullus lanatus HOM05D008619 ORTHO05D000090 9.9e-11 72.8 70 50.0
Ciclev10024138m.g Citrus clementina HOM05D000162 ORTHO05D000090 1.7e-10 72.0 96 44.8
Atru.chr5.1765 Acer truncatum HOM05D008619 ORTHO05D000090 2.2e-10 71.6 80 45.0
Atru.chr6.396 Acer truncatum HOM05D000162 ORTHO05D000090 6.4e-10 70.1 72 47.2
Atru.chr6.444 Acer truncatum HOM05D000162 ORTHO05D000090 6.4e-10 70.1 72 47.2
Sed0020881 Sechium edule HOM05D008619 ORTHO05D000090 1.1e-09 69.3 57 59.6
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.2e-09 67.8 86 40.7
Atru.chr6.231 Acer truncatum HOM05D000162 ORTHO05D000090 4.2e-09 67.4 72 44.4
TAR629G0197 Trochodendron aralioides HOM05D000162 ORTHO05D000090 7.1e-09 66.6 71 42.3
vmacro02633 Vaccinium macrocarpon HOM05D008619 ORTHO05D000090 7.1e-09 66.6 57 52.6
Aqoxy5G03438 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 2.7e-08 64.7 72 48.6
Lsat_1_v5_gn_9_9621 Lactuca sativa HOM05D000162 ORTHO05D000090 2.7e-08 64.7 72 43.1
Nitab4.5_0003279g0010 Nicotiana tabacum HOM05D008619 ORTHO05D000090 3.5e-08 64.3 72 44.4
Sed0025833 Sechium edule HOM05D008619 ORTHO05D025208 3.5e-08 64.3 65 55.4
Nn1g02607 Nelumbo nucifera HOM05D000162 ORTHO05D000090 4.6e-08 63.9 64 43.8
Nn1g02625 Nelumbo nucifera HOM05D000162 ORTHO05D000090 4.6e-08 63.9 81 40.7
PSO017G1775 Papaver somniferum HOM05D000162 ORTHO05D000090 6.0e-08 63.5 66 43.9
Eucgr.K03302 Eucalyptus grandis HOM05D000162 ORTHO05D000090 1.0e-07 62.8 75 44.0
Atru.chr6.395 Acer truncatum HOM05D000162 ORTHO05D000090 1.3e-07 62.4 64 45.3
PSO063G0380 Papaver somniferum HOM05D000162 ORTHO05D000090 1.3e-07 62.4 100 36.0
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 1.3e-07 62.4 69 46.4
COL.COLO4_02780 Corchorus olitorius HOM05D000162 ORTHO05D000090 1.7e-07 62.0 56 50.0
COL.COLO4_20165 Corchorus olitorius HOM05D000162 ORTHO05D000090 1.7e-07 62.0 56 51.8
PSO732G0225 Papaver somniferum HOM05D000162 ORTHO05D000090 1.7e-07 62.0 80 40.0
AUR62032236 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.3e-07 61.6 64 46.9
CANSAT78G1348 Cannabis sativa HOM05D000162 ORTHO05D000090 3.0e-07 61.2 82 41.5
Rhsim13G0031600 Rhododendron simsii HOM05D001376 ORTHO05D003384 3.0e-07 61.2 65 44.6
THA.LOC104808603 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 3.0e-07 61.2 58 50.0
Aqoxy5G04021 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 3.9e-07 60.8 83 43.4
COL.COLO4_20303 Corchorus olitorius HOM05D000162 ORTHO05D000090 3.9e-07 60.8 56 50.0
COL.COLO4_20322 Corchorus olitorius HOM05D000162 ORTHO05D000090 3.9e-07 60.8 68 45.6
COL.COLO4_34076 Corchorus olitorius HOM05D000162 ORTHO05D000090 3.9e-07 60.8 52 53.8
Gohir.D09G225500 Gossypium hirsutum HOM05D000162 ORTHO05D000090 3.9e-07 60.8 64 42.2
Gorai.006G247100 Gossypium raimondii HOM05D000162 ORTHO05D000090 3.9e-07 60.8 64 42.2
Medtr8g083130 Medicago truncatula HOM05D000162 ORTHO05D000090 3.9e-07 60.8 80 40.0
PSO675G7582 Papaver somniferum HOM05D000162 ORTHO05D000090 3.9e-07 60.8 78 41.0
PSO732G0790 Papaver somniferum HOM05D000162 ORTHO05D000090 3.9e-07 60.8 83 39.8
Cc01_g18680 Coffea canephora HOM05D000162 ORTHO05D000090 5.1e-07 60.5 226 44.7
Eucgr.K03305 Eucalyptus grandis HOM05D000162 ORTHO05D000090 5.1e-07 60.5 58 48.3
Sed0014077 Sechium edule HOM05D008619 ORTHO05D000090 5.1e-07 60.5 57 54.4
TAR362G0483 Trochodendron aralioides HOM05D000162 ORTHO05D000090 5.1e-07 60.5 66 39.4
COL.COLO4_09887 Corchorus olitorius HOM05D000162 ORTHO05D000090 6.6e-07 60.1 56 50.0
PSO732G0487 Papaver somniferum HOM05D000162 ORTHO05D000090 6.6e-07 60.1 77 40.3
QL04p041428 Quercus lobata HOM05D000162 ORTHO05D000090 6.6e-07 60.1 97 30.9
Aqoxy2G00962 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 8.7e-07 59.7 64 43.8
Duzib138G1327 Durio zibethinus HOM05D008619 ORTHO05D000090 8.7e-07 59.7 66 42.4
PSO017G5032 Papaver somniferum HOM05D000162 ORTHO05D000090 8.7e-07 59.7 82 39.0
CANSAT11G1734 Cannabis sativa HOM05D000162 ORTHO05D000090 1.1e-06 59.3 64 46.9
PSO170G1618 Papaver somniferum HOM05D000162 ORTHO05D000090 1.1e-06 59.3 86 37.2
PSO832G3344 Papaver somniferum HOM05D018600 ORTHO05D000090 1.1e-06 59.3 59 47.5
THA.LOC104809084 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.1e-06 59.3 96 37.5
TPR.G18222 Trifolium pratense HOM05D000162 ORTHO05D000090 1.1e-06 59.3 78 41.0
MD03G1106000 Malus domestica HOM05D000162 ORTHO05D000090 1.5e-06 58.9 57 45.6
PSO063G6560 Papaver somniferum HOM05D000162 ORTHO05D000090 1.5e-06 58.9 73 41.1
PSO675G7877 Papaver somniferum HOM05D000162 ORTHO05D000090 1.9e-06 58.5 65 44.6
QL03p018633 Quercus lobata HOM05D000162 ORTHO05D000090 1.9e-06 58.5 84 35.7
CANSAT11G1554 Cannabis sativa HOM05D000162 ORTHO05D000090 2.5e-06 58.2 79 35.4
PSO378G0001 Papaver somniferum HOM05D000162 ORTHO05D000090 2.5e-06 58.2 73 41.1
PSO675G4027 Papaver somniferum HOM05D000162 ORTHO05D000090 2.5e-06 58.2 73 41.1
PSO675G5902 Papaver somniferum HOM05D000162 ORTHO05D000090 2.5e-06 58.2 73 41.1
QL03p014045 Quercus lobata HOM05D000162 ORTHO05D000090 2.5e-06 58.2 78 37.2
RcHm_v2.0_Chr5g0061091 Rosa chinensis HOM05D000162 ORTHO05D000090 2.5e-06 58.2 88 39.8
THA.LOC104809083 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.5e-06 58.2 64 42.2
THA.LOC104809085 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.5e-06 58.2 64 42.2
CANSAT54G0407 Cannabis sativa HOM05D000162 ORTHO05D000090 3.3e-06 57.8 57 42.1
Duzib151G0222 Durio zibethinus HOM05D000162 ORTHO05D000090 3.3e-06 57.8 63 39.7
Eucgr.H04332 Eucalyptus grandis HOM05D000162 ORTHO05D000090 3.3e-06 57.8 65 43.1
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 3.3e-06 57.8 86 36.0
PSO732G0095 Papaver somniferum HOM05D000162 ORTHO05D000090 3.3e-06 57.8 67 40.3
QL03p009219 Quercus lobata HOM05D000162 ORTHO05D000090 3.3e-06 57.8 90 32.2
arahy.Tifrunner.gnm1.ann1.78B0B6 Arachis hypogaea HOM05D000162 ORTHO05D000090 4.3e-06 57.4 77 39.0
BcaNung00275 Brassica carinata HOM05D015738 ORTHO05D018680 4.3e-06 57.4 63 38.1
A01p22160 Brassica napus HOM05D015738 ORTHO05D018680 4.3e-06 57.4 66 37.9
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 4.3e-06 57.4 68 44.1
PSO063G0531 Papaver somniferum HOM05D000162 ORTHO05D000090 4.3e-06 57.4 81 38.3
Prupe.1G166700 Prunus persica HOM05D000162 ORTHO05D000090 4.3e-06 57.4 73 43.8
Prupe.1G167000 Prunus persica HOM05D000162 ORTHO05D000090 4.3e-06 57.4 73 43.8
QL03p009051 Quercus lobata HOM05D000162 ORTHO05D000090 4.3e-06 57.4 90 32.2
QL09p001249 Quercus lobata HOM05D000162 ORTHO05D000090 4.3e-06 57.4 90 35.6
Gohir.A11G128001 Gossypium hirsutum HOM05D024768 ORTHO05D021044 5.6e-06 57.0 67 43.3
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 5.6e-06 57.0 72 38.9
QL04p042189 Quercus lobata HOM05D000162 ORTHO05D000090 5.6e-06 57.0 78 35.9
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 5.6e-06 57.0 72 38.9
Ciclev10028053m.g Citrus clementina HOM05D000162 ORTHO05D000090 7.4e-06 56.6 80 38.8
Gohir.A09G223600 Gossypium hirsutum HOM05D000162 ORTHO05D000090 7.4e-06 56.6 64 39.1
MD04G1014300 Malus domestica HOM05D000162 ORTHO05D000090 7.4e-06 56.6 62 46.8
MD04G1016200 Malus domestica HOM05D000162 ORTHO05D000090 7.4e-06 56.6 79 41.8
PSO675G1267 Papaver somniferum HOM05D000162 ORTHO05D000090 7.4e-06 56.6 65 43.1
QL03p008587 Quercus lobata HOM05D000162 ORTHO05D000090 7.4e-06 56.6 79 36.7
QL03p012973 Quercus lobata HOM05D000162 ORTHO05D000090 7.4e-06 56.6 72 36.1
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 7.4e-06 56.6 78 35.9
QL03p040069 Quercus lobata HOM05D000162 ORTHO05D000090 7.4e-06 56.6 76 36.8
Sc07g0008460 Simmondsia chinensis HOM05D000162 ORTHO05D000090 7.4e-06 56.6 89 31.5
TPR.G11943 Trifolium pratense HOM05D000162 ORTHO05D000090 7.4e-06 56.6 68 42.6
Eucgr.H04330 Eucalyptus grandis HOM05D000162 ORTHO05D000090 9.6e-06 56.2 65 41.5
QL03p013302 Quercus lobata HOM05D000162 ORTHO05D000090 9.6e-06 56.2 104 31.7
RcHm_v2.0_Chr4g0414121 Rosa chinensis HOM05D000162 ORTHO05D000090 9.6e-06 56.2 72 44.4
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 9.6e-06 56.2 81 37.0


User provided reference genes

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