Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.2e-186 656.4 321 100.0
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 7.8e-151 537.3 335 82.4
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 3.1e-147 525.4 335 80.9
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 8.9e-147 523.9 335 80.3
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.3e-124 450.3 328 66.5
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 2.2e-121 439.5 322 67.4
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 3.8e-121 438.7 324 67.3
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 3.8e-121 438.7 324 67.3
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.9e-121 438.3 324 67.0
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 4.9e-121 438.3 322 67.4
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 6.4e-121 438.0 325 67.1
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 4.6e-119 431.8 323 66.6
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 6.0e-119 431.4 330 63.9
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 6.0e-119 431.4 330 63.3
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 8.7e-118 427.6 330 64.8
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 5.6e-117 424.9 322 64.9
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.8e-116 422.5 322 65.2
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 3.7e-116 422.2 323 65.0
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 4.8e-116 421.8 325 64.9
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 1.4e-115 420.2 322 62.4
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 2.4e-115 419.5 322 63.4
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 4.0e-115 418.7 325 63.1
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 4.0e-115 418.7 330 63.6
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 6.9e-115 417.9 323 64.4
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 6.9e-115 417.9 331 63.4
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 9.0e-115 417.5 323 64.7
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 9.0e-115 417.5 322 62.1
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 1.5e-114 416.8 323 63.8
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 2.0e-114 416.4 330 62.1
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 2.0e-114 416.4 323 64.7
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 2.6e-114 416.0 331 59.8
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 3.4e-114 415.6 322 62.7
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 4.5e-114 415.2 331 63.1
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 4.5e-114 415.2 323 65.6
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 5.8e-114 414.8 323 63.8
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 7.6e-114 414.5 331 62.2
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 7.6e-114 414.5 330 60.6
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.0e-113 414.1 323 63.8
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.0e-113 414.1 330 60.0
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.3e-113 413.7 323 64.4
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.3e-113 413.7 334 63.8
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 1.7e-113 413.3 330 60.3
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.2e-113 412.9 322 63.0
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 2.9e-113 412.5 331 62.2
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 2.9e-113 412.5 322 62.7
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 3.8e-113 412.1 334 63.5
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.9e-113 411.8 334 63.2
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 4.9e-113 411.8 322 62.7
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 6.5e-113 411.4 328 64.0
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 8.4e-113 411.0 323 63.5
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 1.4e-112 410.2 338 61.2
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 1.9e-112 409.8 322 61.8
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.9e-112 409.8 327 62.1
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 2.5e-112 409.5 322 62.1
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 3.2e-112 409.1 323 63.2
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 4.2e-112 408.7 323 63.2
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 7.1e-112 407.9 356 59.8
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 9.3e-112 407.5 323 62.8
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 9.3e-112 407.5 323 62.8
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.6e-111 406.8 334 60.8
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 3.5e-111 405.6 321 60.7
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 7.9e-111 404.4 322 63.4
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 7.9e-111 404.4 358 59.2
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 1.0e-110 404.1 319 63.3
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.3e-110 403.7 295 66.8
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.3e-110 403.7 334 62.6
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 2.3e-110 402.9 319 61.4
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 2.3e-110 402.9 334 62.3
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 1.5e-109 400.2 322 61.2
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 3.3e-109 399.1 357 57.7
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 1.6e-108 396.7 322 59.9
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.3e-108 394.8 327 58.4
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.3e-108 394.8 327 58.4
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 3.1e-107 392.5 320 60.0
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 4.1e-107 392.1 294 65.0
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.4e-106 389.0 370 54.3
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 7.7e-106 387.9 322 60.6
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.5e-104 381.7 344 59.0
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 3.6e-103 379.0 346 60.4
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.0e-102 377.5 344 58.4
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 2.5e-101 372.9 295 63.4
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 9.7e-101 370.9 326 59.8
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.1e-99 367.5 243 67.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.1e-99 367.5 319 59.9
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.8e-99 366.7 317 58.7
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.3e-99 365.2 322 58.4
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.0e-98 363.2 376 53.2
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 3.4e-98 362.5 322 59.0
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 3.0e-94 349.4 325 57.8
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 3.9e-94 349.0 323 55.7
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.1e-93 347.4 323 56.3
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 4.1e-91 339.0 275 61.8
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 4.1e-91 339.0 322 55.9
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 5.9e-90 335.1 322 52.5
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 5.9e-90 335.1 327 53.8
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 2.9e-89 332.8 293 58.7
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 6.5e-89 331.6 236 65.7
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 3.9e-86 322.4 267 61.4
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 4.1e-83 312.4 184 77.2
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 4.1e-83 312.4 255 62.0
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 6.1e-79 298.5 332 50.3
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 8.8e-78 294.7 294 51.7
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 2.0e-77 293.5 247 62.8
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 1.7e-76 290.4 319 49.8
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.7e-76 290.4 332 50.0
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 9.1e-75 284.6 182 71.4
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.3e-73 280.8 215 61.4
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.0e-73 278.9 217 60.4
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.5e-69 267.3 329 46.8
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 3.8e-65 252.7 327 44.0
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 5.0e-65 252.3 328 43.0
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.6e-63 247.3 330 41.8
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 7.5e-61 238.4 153 68.6
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 4.3e-56 222.6 319 42.3
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 5.8e-53 212.2 170 61.8
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 6.0e-50 202.2 153 60.8
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 3.6e-47 193.0 115 70.4
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 2.3e-41 173.7 342 34.8
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.5e-40 171.0 163 58.3
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 1.6e-39 167.5 176 50.0
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 4.7e-39 166.0 192 43.2
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 3.7e-36 156.4 317 33.8
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.1e-35 154.8 191 50.3
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.1e-27 125.6 144 47.2
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 3.5e-26 123.2 341 30.2
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 6.0e-26 122.5 143 49.0
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 6.4e-20 102.4 82 62.2
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 7.3e-16 89.0 60 71.7
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.1e-14 85.1 75 50.7
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.6e-10 71.2 50 74.0
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 2.1e-10 70.9 48 64.6
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 8.7e-09 65.5 66 48.5
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 3.3e-08 63.5 42 59.5


User provided reference genes

Program Settings