Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.5e-238 830.1 845 100.0
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 9.2e-175 618.2 839 87.6
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 1.0e-170 604.7 850 85.2
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.1e-167 594.7 850 84.5
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 2.5e-79 301.2 696 77.4
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.6e-78 298.5 804 73.1
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 6.1e-78 296.6 674 82.5
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 9.8e-76 289.3 667 82.9
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 2.0e-73 281.6 679 82.0
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.2e-72 278.1 736 76.5
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 3.8e-72 277.3 668 81.9
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 5.5e-71 273.5 815 73.4
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 3.6e-70 270.8 806 72.3
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 1.4e-69 268.9 688 80.5
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.3e-69 268.1 837 71.3
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 4.4e-68 263.8 654 82.3
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 5.7e-68 263.5 666 82.0
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 6.3e-67 260.0 679 79.5
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 3.1e-66 257.7 670 72.2
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 9.1e-66 256.1 281 66.5
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.2e-65 255.8 458 58.3
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 3.5e-65 254.2 661 80.9
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 7.7e-65 253.1 673 80.7
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.3e-64 252.3 670 75.8
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 2.3e-64 251.5 786 72.0
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 3.8e-64 250.8 298 72.5
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 8.6e-64 249.6 696 78.2
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 4.2e-63 247.3 751 73.8
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.6e-62 245.4 299 66.9
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.6e-62 245.4 696 78.3
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 2.1e-62 245.0 679 78.2
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.8e-62 244.6 696 78.2
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.3e-61 241.5 696 78.2
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 4.4e-60 237.3 296 70.6
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 7.5e-60 236.5 794 72.4
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.3e-59 235.7 302 57.9
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 1.7e-59 235.3 635 83.8
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.7e-59 235.3 756 72.4
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 8.3e-59 233.0 301 70.4
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 1.4e-58 232.3 680 78.1
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 7.0e-58 229.9 682 77.3
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 7.0e-58 229.9 689 77.6
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 2.0e-57 228.4 681 78.7
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 7.8e-57 226.5 685 76.6
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 7.8e-57 226.5 685 76.6
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 7.8e-57 226.5 170 63.5
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 7.8e-57 226.5 673 78.8
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 8.6e-56 223.0 677 77.0
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 5.6e-55 220.3 171 63.7
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.2e-54 219.2 173 59.5
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 2.8e-54 218.0 750 71.5
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 3.6e-54 217.6 178 58.4
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 1.0e-53 216.1 728 72.9
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.8e-53 215.3 824 68.1
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 3.1e-53 214.5 681 77.5
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 6.8e-53 213.4 198 55.6
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 8.9e-53 213.0 697 76.6
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 2.0e-52 211.8 693 76.2
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.4e-52 210.7 173 57.8
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 1.3e-51 209.1 299 65.2
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 1.7e-51 208.8 667 73.2
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 6.4e-51 206.8 163 63.2
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 8.3e-51 206.5 298 65.1
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 8.3e-51 206.5 679 77.0
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 7.0e-50 203.4 162 63.0
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 7.0e-50 203.4 254 48.0
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 1.2e-49 202.6 712 74.2
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 1.2e-49 202.6 752 70.1
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 2.0e-49 201.8 142 67.6
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 2.0e-49 201.8 173 57.8
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 7.8e-49 199.9 160 63.1
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 7.8e-49 199.9 173 59.0
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.7e-48 198.7 658 78.6
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 8.6e-48 196.4 289 61.6
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.1e-47 196.1 141 67.4
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 1.5e-47 195.7 679 72.0
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 9.5e-47 193.0 680 76.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 4.7e-46 190.7 141 64.5
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 1.1e-45 189.5 672 72.3
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 5.2e-45 187.2 753 68.9
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 5.2e-45 187.2 280 65.4
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.2e-44 186.0 672 72.5
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 2.6e-44 184.9 132 67.4
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 2.6e-44 184.9 132 67.4
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 2.6e-44 184.9 132 67.4
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 4.4e-44 184.1 135 65.2
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 9.8e-44 183.0 297 64.3
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 1.3e-43 182.6 132 66.7
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.3e-43 182.6 132 65.9
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 3.7e-43 181.0 150 58.7
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 6.4e-43 180.3 409 55.3
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 1.9e-42 178.7 132 65.9
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.9e-42 178.7 153 58.8
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 4.1e-42 177.6 137 62.8
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 5.4e-42 177.2 132 65.9
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 5.4e-42 177.2 136 62.5
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 9.2e-42 176.4 674 60.2
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 9.2e-42 176.4 279 63.1
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 2.1e-41 175.3 140 60.0
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 2.1e-41 175.3 153 55.6
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 2.7e-41 174.9 255 50.2
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 6.0e-41 173.7 254 71.3
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 7.8e-41 173.3 660 77.1
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 3.9e-40 171.0 385 52.2
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 3.3e-39 167.9 275 40.4
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 3.6e-38 164.5 123 63.4
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 3.1e-37 161.4 173 49.1
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 2.2e-35 155.2 123 61.0
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 7.1e-34 150.2 107 68.2
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 7.8e-33 146.7 117 59.0
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 3.9e-32 144.4 101 66.3
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 1.9e-31 142.1 109 63.3
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 2.8e-30 138.3 106 63.2
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 8.1e-30 136.7 133 52.6
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.5e-28 132.5 105 61.9
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 8.4e-27 126.7 87 72.4
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 1.1e-26 126.3 113 58.4
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.1e-26 126.3 112 50.9
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 2.1e-25 122.1 109 55.0
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 2.3e-24 118.6 93 61.3
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 5.8e-20 104.0 120 50.0
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.4e-18 99.4 83 59.0
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 3.2e-18 98.2 95 51.6
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 3.2e-18 98.2 76 61.8
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.3e-16 92.8 58 70.7
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.4e-13 82.8 86 51.2
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 3.1e-13 81.6 50 78.0
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 9.0e-13 80.1 59 64.4
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 7.6e-12 77.0 58 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 1.9e-10 72.4 132 36.4
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 1.9e-10 72.4 141 27.7
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 5.5e-10 70.9 130 27.7
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 6.0e-09 67.4 116 42.2
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 6.0e-09 67.4 173 26.6
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 6.0e-09 67.4 163 27.0
AagrBONN_evm.TU.Sc2ySwM_344.4462 Anthoceros agrestis HOM05D004079 ORTHO05D000355 2.3e-08 65.5 124 29.8
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 2.3e-08 65.5 48 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 3.9e-08 64.7 132 28.8
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 8.7e-08 63.5 147 27.2
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 1.1e-07 63.2 147 27.2
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 1.1e-07 63.2 147 27.9
Duzib151G0326 Durio zibethinus HOM05D006740 ORTHO05D008571 1.5e-07 62.8 142 23.9
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 1.5e-07 62.8 147 27.2
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.5e-07 62.8 175 29.1
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 1.9e-07 62.4 127 26.0
Gohir.D02G001700 Gossypium hirsutum HOM05D006740 ORTHO05D008571 3.3e-07 61.6 127 26.0
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 4.3e-07 61.2 150 26.0
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 5.6e-07 60.8 43 65.1
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 5.6e-07 60.8 196 27.6
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 5.6e-07 60.8 150 26.0
CDE05G3024 Ceratophyllum demersum HOM05D006740 ORTHO05D008571 7.4e-07 60.5 118 28.8
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 9.6e-07 60.1 147 27.9
MD15G1385700 Malus domestica HOM05D006740 ORTHO05D008571 9.6e-07 60.1 135 25.2
Nn1g00512 Nelumbo nucifera HOM05D006740 ORTHO05D008571 9.6e-07 60.1 142 27.5
ATR0697G176 Amborella trichopoda HOM05D000104 ORTHO05D026583 1.3e-06 59.7 148 26.4
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.3e-06 59.7 134 28.4
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 1.6e-06 59.3 141 22.0
Duzib150G1285 Durio zibethinus HOM05D002737 ORTHO05D009499 2.1e-06 58.9 151 29.8
Hma1.2p1_0579F.1_g182710 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 2.1e-06 58.9 146 26.7
PGSC0003DMG400005248 Solanum tuberosum HOM05D000104 ORTHO05D009920 2.1e-06 58.9 148 27.7
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 2.8e-06 58.5 157 26.8
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 3.7e-06 58.2 148 28.4
Nn5g27420 Nelumbo nucifera HOM05D006740 ORTHO05D008571 3.7e-06 58.2 141 25.5
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 3.7e-06 58.2 180 27.2
SHI20145 Sapria himalayana HOM05D000424 ORTHO05D002854 3.7e-06 58.2 144 28.5
ATR1089G041 Amborella trichopoda HOM05D000104 ORTHO05D009920 4.8e-06 57.8 144 29.2
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 4.8e-06 57.8 163 28.8
Gohir.A02G001400 Gossypium hirsutum HOM05D006740 ORTHO05D008571 4.8e-06 57.8 117 25.6
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 4.8e-06 57.8 139 27.3
TAR629G1995 Trochodendron aralioides HOM05D002737 ORTHO05D009499 4.8e-06 57.8 129 30.2
Potri.006G015900 Populus trichocarpa HOM05D002737 ORTHO05D009499 8.1e-06 57.0 131 31.3
Sabra06G0011300 Salix brachista HOM05D002221 ORTHO05D002626 8.1e-06 57.0 131 31.3
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 8.1e-06 57.0 139 26.6


User provided reference genes

Program Settings