Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.2e-176 623.6 409 100.0
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.2e-166 590.5 409 93.9
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.2e-166 590.5 409 93.9
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 1.1e-156 557.4 402 87.1
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.2e-152 543.9 412 78.6
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.6e-152 543.5 424 85.6
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 2.1e-152 543.1 399 88.7
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.1e-152 543.1 399 85.0
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 3.1e-151 539.3 405 75.1
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 1.2e-150 537.3 405 88.6
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.2e-150 537.3 412 85.9
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.6e-150 536.2 405 77.3
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.6e-150 536.2 406 87.4
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.4e-150 535.8 397 87.4
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.4e-150 535.8 409 85.6
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 3.4e-150 535.8 416 80.5
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 3.4e-150 535.8 416 80.5
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 4.4e-150 535.4 401 80.5
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 7.6e-150 534.6 406 85.7
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.7e-149 533.5 401 82.3
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.7e-149 533.5 406 86.5
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 2.2e-149 533.1 405 87.7
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 2.9e-149 532.7 406 84.2
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 3.7e-149 532.3 411 86.6
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 4.9e-149 531.9 399 88.7
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 6.4e-149 531.6 413 83.8
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.4e-149 531.6 405 87.4
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.4e-149 531.6 405 87.4
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 6.4e-149 531.6 403 87.1
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 8.4e-149 531.2 405 87.2
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.1e-148 530.8 407 87.0
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 1.4e-148 530.4 405 87.2
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.4e-148 530.4 407 86.5
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.9e-148 530.0 405 85.2
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 7.1e-148 528.1 403 85.9
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 7.1e-148 528.1 399 87.2
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 9.2e-148 527.7 402 86.8
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.6e-147 526.9 401 85.3
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.6e-147 526.9 405 85.7
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 2.7e-147 526.2 408 84.8
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 6.0e-147 525.0 400 87.0
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 6.0e-147 525.0 396 81.3
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 1.3e-146 523.9 405 85.2
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.3e-146 523.1 406 86.7
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 2.3e-146 523.1 404 86.9
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 6.6e-146 521.5 406 84.2
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 8.6e-146 521.2 409 83.6
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.1e-145 520.8 410 70.7
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.9e-145 520.0 402 85.1
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.6e-144 516.9 400 83.0
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 1.1e-143 514.2 398 86.4
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.4e-143 513.8 409 85.3
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.8e-143 513.5 405 72.3
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.5e-142 510.4 396 80.6
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 2.0e-142 510.0 408 77.0
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.0e-142 510.0 394 85.3
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 2.2e-141 506.5 395 85.3
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.1e-140 504.2 398 74.9
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 2.4e-140 503.1 402 83.8
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.7e-138 496.9 402 80.6
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.3e-138 496.5 416 70.7
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 3.9e-138 495.7 402 72.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 6.6e-138 495.0 397 73.3
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.1e-137 494.2 416 70.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 3.3e-137 492.7 391 77.7
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 5.6e-137 491.9 398 73.1
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.6e-136 490.3 401 73.8
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 4.8e-136 488.8 413 70.9
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.5e-134 483.8 412 72.3
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 3.4e-134 482.6 405 82.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 5.8e-134 481.9 391 83.1
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.9e-133 479.6 406 71.9
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.9e-133 479.6 406 71.9
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.4e-133 478.4 406 71.7
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.9e-132 476.9 400 72.5
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 2.7e-131 473.0 404 77.5
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.7e-131 473.0 400 67.5
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.3e-130 470.7 407 76.7
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 6.6e-130 468.4 517 64.0
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 8.7e-130 468.0 401 77.1
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.1e-129 467.6 401 73.8
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.1e-129 467.6 390 79.2
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 5.6e-129 465.3 400 79.0
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 9.6e-129 464.5 392 78.1
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 9.6e-129 464.5 392 78.1
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 9.6e-129 464.5 392 78.1
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 1.3e-128 464.2 399 81.2
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.1e-128 463.4 392 77.8
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 6.2e-128 461.8 392 66.1
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 2.4e-127 459.9 391 77.7
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 4.0e-127 459.1 397 80.1
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 6.9e-127 458.4 390 78.7
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.0e-126 456.8 525 62.9
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.6e-126 456.4 397 80.4
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 4.5e-126 455.7 397 80.1
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 4.5e-126 455.7 401 76.1
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 4.5e-126 455.7 359 85.5
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 7.6e-126 454.9 392 77.0
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 7.6e-126 454.9 392 77.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 2.9e-125 453.0 389 72.8
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.1e-124 451.1 388 77.8
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 3.2e-124 449.5 397 68.5
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.1e-122 442.2 421 65.8
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 6.7e-122 441.8 426 64.8
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.1e-121 441.0 391 77.2
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.6e-120 437.2 396 68.7
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 6.7e-114 415.2 402 57.7
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 5.3e-111 405.6 406 58.9
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.2e-110 404.4 385 72.2
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 7.6e-110 401.7 396 66.2
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 3.8e-109 399.4 403 59.6
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-108 397.9 399 59.1
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-107 394.4 404 59.4
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 1.2e-107 394.4 404 59.4
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.6e-107 394.0 424 56.4
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.6e-107 394.0 422 59.7
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 3.0e-106 389.8 404 59.2
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 6.7e-106 388.7 391 66.8
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.5e-105 387.5 400 66.0
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 3.3e-105 386.3 419 54.4
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 3.7e-104 382.9 377 61.0
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 4.8e-104 382.5 391 73.4
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.8e-103 380.6 433 54.5
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 9.0e-103 378.3 390 56.7
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 3.2e-100 369.8 445 48.1
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.3e-96 357.8 410 53.7
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.7e-96 356.3 314 76.1
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-93 347.8 404 53.0
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 1.7e-88 330.9 335 62.7
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 9.1e-87 325.1 387 51.2
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 5.9e-86 322.4 316 69.0
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-82 310.5 386 47.9
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.8e-80 303.5 366 53.6
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 5.9e-78 295.8 387 45.0
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.4e-74 284.6 197 68.5
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.4e-74 284.6 416 47.6
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.8e-71 274.2 293 75.8
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 5.9e-70 269.2 254 65.7
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 3.4e-65 253.4 388 50.5
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 9.8e-65 251.9 194 64.4
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.2e-64 250.8 401 42.1
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.6e-59 234.6 251 59.0
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 2.3e-58 230.7 251 58.6
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 5.6e-52 209.5 103 94.2
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 5.8e-49 199.5 212 49.5
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.7e-48 196.8 103 86.4
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 6.4e-48 196.1 220 50.0
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.9e-47 194.5 129 73.6
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 3.2e-47 193.7 212 49.5
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.3e-42 177.6 88 90.9
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 6.6e-37 159.5 398 35.4
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 2.1e-35 154.5 104 67.3
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 4.9e-32 143.3 95 71.6
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 6.4e-32 142.9 154 53.2
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-31 141.0 102 67.6
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 4.3e-28 130.2 84 75.0
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 5.6e-28 129.8 185 42.7
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 2.4e-26 124.4 80 73.8
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 4.9e-24 116.7 57 86.0
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.4e-23 115.2 107 59.8
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 3.9e-21 107.1 90 61.1
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 6.6e-21 106.3 74 68.9
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.3e-19 102.1 50 82.0
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 9.0e-18 95.9 63 69.8
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.3e-16 92.0 44 93.2
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 8.4e-16 89.4 79 57.0
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 8.4e-16 89.4 45 86.7
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 8.4e-16 89.4 43 93.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.4e-15 86.7 43 88.4
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 1.2e-14 85.5 120 62.5
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.6e-14 85.1 45 84.4
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 6.7e-13 79.7 43 83.7
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 6.7e-13 79.7 43 83.7
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 5.6e-12 76.6 103 44.7
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 3.6e-11 73.9 38 84.2
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 4.8e-11 73.6 151 31.8
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 8.1e-11 72.8 46 67.4
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 1.1e-10 72.4 83 43.4
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 9.9e-09 65.9 40 72.5
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 9.3e-07 59.3 40 70.0
Actinidia18910 Actinidia chinensis HOM05D002288 ORTHO05D002894 4.6e-06 57.0 76 36.8


User provided reference genes

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