Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1521.5 765 100.0
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1389.0 768 91.4
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1374.8 780 89.2
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1369.0 771 90.0
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1366.3 771 89.5
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1164.1 765 76.5
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1162.5 765 76.1
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1159.1 766 75.3
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 770 75.2
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 769 75.6
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1149.8 762 76.1
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1149.4 766 76.1
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 766 75.5
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1146.3 765 75.6
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1141.7 767 75.4
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1137.1 765 75.2
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1136.7 765 75.0
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1135.2 765 75.2
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1127.5 762 74.0
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1124.4 793 72.6
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1124.0 765 73.9
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1120.9 765 73.9
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1118.6 765 73.7
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1118.2 767 75.1
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1116.3 762 73.4
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1113.6 765 73.5
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1103.2 733 75.4
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1100.9 766 73.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1097.8 763 72.9
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 744 73.8
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 762 73.4
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1094.3 764 72.1
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1094.0 768 74.2
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1092.0 762 73.4
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 768 73.6
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 768 73.6
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1090.9 762 72.7
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1090.9 764 73.8
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 764 71.7
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1085.5 766 71.8
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 762 71.9
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1083.2 765 71.4
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1082.0 765 72.3
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1081.2 767 70.3
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1080.5 767 71.4
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1080.5 778 71.1
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1079.3 768 72.4
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1075.1 768 70.4
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 5.2e-312 1074.7 764 72.0
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.7e-311 1070.8 765 71.0
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 6.3e-311 1070.5 761 72.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 3.0e-310 1068.1 762 70.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 8.8e-310 1066.6 766 71.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 3.3e-309 1064.7 771 70.3
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 5.7e-309 1063.9 768 70.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 7.5e-309 1063.5 762 70.3
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.7e-308 1062.4 762 70.7
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 1.7e-308 1062.4 766 69.1
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 2.2e-308 1062.0 706 75.9
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.8e-308 1061.6 765 70.5
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.8e-308 1061.6 767 70.7
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 6.3e-308 1060.4 764 71.5
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.4e-307 1059.3 765 70.1
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 2.4e-307 1058.5 765 69.7
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 2.0e-306 1055.4 764 70.5
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 3.8e-305 1051.2 766 70.8
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 5.0e-305 1050.8 761 70.8
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 8.5e-305 1050.0 735 72.1
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 8.5e-305 1050.0 867 63.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 2.5e-304 1048.5 761 69.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 1.6e-303 1045.8 761 68.9
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 4.0e-302 1041.2 753 71.0
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 5.2e-302 1040.8 668 78.1
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 3.4e-301 1038.1 767 69.6
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 5.7e-301 1037.3 842 65.2
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 5.7e-301 1037.3 778 68.8
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 2.8e-300 1035.0 763 68.4
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 3.7e-300 1034.6 765 69.2
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 3.7e-300 1034.6 848 65.2
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 8.3e-300 1033.5 764 68.7
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 8.3e-300 1033.5 764 68.7
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 4.1e-299 1031.2 765 69.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 7.7e-298 1026.9 764 68.5
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 2.3e-297 1025.4 796 67.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.9e-297 1025.0 765 68.2
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 6.6e-297 1023.8 767 69.0
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 5.5e-296 1020.8 780 68.1
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 5.2e-294 1014.2 822 65.3
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 6.8e-294 1013.8 779 68.0
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 9.8e-293 1010.0 764 66.6
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 3.7e-292 1008.1 764 67.0
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 4.1e-291 1004.6 765 66.7
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 4.1e-291 1004.6 765 66.7
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.3e-289 999.6 721 70.3
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 3.3e-288 995.0 738 69.1
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 3.6e-287 991.5 801 65.5
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 8.0e-287 990.3 765 66.0
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 1.8e-286 989.2 763 66.7
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.3e-286 988.8 766 66.6
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.5e-285 986.1 767 67.0
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.6e-285 985.3 771 66.3
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.7e-284 982.6 767 67.0
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 2.9e-284 981.9 767 66.9
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 3.4e-277 958.4 723 67.6
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 9.8e-277 956.8 765 64.8
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.6e-266 922.9 675 68.9
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.5e-264 916.4 767 62.2
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.2e-263 913.3 765 62.7
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 9.9e-261 903.7 739 62.7
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.7e-258 895.6 684 67.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.3e-252 876.7 535 81.7
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.6e-250 869.8 773 59.0
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 6.6e-249 864.4 607 73.5
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.3e-248 861.7 608 73.0
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.2e-236 822.8 594 71.9
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 6.7e-225 784.6 775 58.2
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 7.9e-218 761.1 796 53.0
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 9.7e-216 754.2 542 70.8
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 2.0e-200 703.4 763 52.3
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.7e-191 672.5 783 47.6
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.8e-188 662.5 785 47.4
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 2.1e-186 656.8 791 46.0
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.7e-175 620.5 383 79.6
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.5e-173 612.8 758 47.9
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.1e-158 562.8 469 63.5
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.1e-155 554.7 494 62.6
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 3.3e-155 553.1 474 63.3
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.6e-154 549.7 457 63.9
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.7e-154 549.3 390 70.0
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 3.4e-152 543.1 363 75.2
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 2.6e-144 516.9 465 60.0
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.6e-141 507.7 770 41.9
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 6.9e-129 465.7 296 78.4
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.9e-124 449.9 385 61.3
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.7e-119 434.5 367 64.6
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 4.3e-115 419.9 667 41.4
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.6e-109 401.4 283 71.4
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 8.7e-108 395.6 386 56.5
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 4.7e-93 346.7 221 73.8
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 3.5e-88 330.5 226 72.6
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.9e-87 327.4 290 59.0
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 9.4e-86 322.4 226 67.7
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 2.3e-84 317.8 215 74.4
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.6e-83 314.3 197 77.7
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 6.8e-76 289.7 248 60.5
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 4.2e-70 270.4 173 74.6
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 2.0e-64 251.5 185 65.9
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 4.4e-59 233.8 150 81.3
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.0e-56 224.9 164 68.3
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.2e-51 209.1 132 79.5
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 2.1e-45 188.3 601 30.0
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.6e-35 154.8 276 41.3
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 6.6e-31 140.2 128 62.5
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 4.3e-30 137.5 138 56.5
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 5.6e-30 137.1 72 94.4
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 3.3e-22 111.3 77 77.9
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 5.6e-22 110.5 110 57.3
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.3e-15 89.4 99 49.5
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.3e-13 82.8 59 71.2
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.6e-08 64.3 35 80.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 4.6e-08 64.3 35 80.0
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 4.6e-08 64.3 35 80.0


User provided reference genes

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