Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 5.6e-105 385.2 319 100.0
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.2e-78 297.7 318 80.2
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.0e-77 294.7 318 83.3
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.9e-76 290.4 318 77.4
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 4.7e-67 259.2 318 73.9
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 6.1e-67 258.8 318 73.3
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.0e-66 258.1 318 73.0
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.4e-66 257.7 318 73.0
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.3e-66 256.9 318 67.3
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.0e-66 256.5 318 67.0
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 1.5e-62 244.2 318 78.6
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 2.0e-62 243.8 318 70.4
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 5.9e-62 242.3 318 72.6
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 5.9e-62 242.3 318 72.6
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 5.5e-60 235.7 320 59.1
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 4.7e-59 232.6 319 69.3
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 4.4e-57 226.1 318 71.7
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 5.7e-57 225.7 283 65.7
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.3e-56 224.6 317 67.8
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.7e-56 224.2 318 67.9
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 2.8e-56 223.4 322 65.2
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 8.2e-56 221.9 318 65.7
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.1e-55 221.5 320 67.5
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 1.4e-55 221.1 318 63.8
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 1.8e-55 220.7 319 64.3
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 4.1e-55 219.5 319 64.6
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 1.6e-54 217.6 318 65.7
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 1.6e-54 217.6 318 65.4
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 4.5e-54 216.1 318 65.7
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 1.7e-53 214.2 318 62.6
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 3.8e-53 213.0 322 51.2
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 1.1e-52 211.5 319 63.0
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 1.9e-52 210.7 318 59.4
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.2e-52 209.5 316 67.1
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 4.2e-52 209.5 319 63.0
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 5.5e-52 209.1 318 61.9
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 7.2e-52 208.8 316 67.7
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 1.6e-51 207.6 318 61.9
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 8.0e-51 205.3 321 64.2
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.3e-50 203.8 320 66.6
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 3.0e-50 203.4 318 68.2
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 5.7e-49 199.1 323 66.6
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 5.7e-49 199.1 322 64.6
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 5.7e-49 199.1 318 65.1
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 2.2e-48 197.2 317 65.9
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.8e-47 194.1 319 59.9
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 4.1e-47 193.0 318 62.3
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 1.6e-46 191.0 320 66.2
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 4.5e-46 189.5 307 60.9
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 5.9e-46 189.1 319 64.6
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.0e-45 188.3 320 60.9
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 1.3e-45 188.0 313 67.7
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.7e-45 187.6 320 61.6
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.2e-45 187.2 320 60.9
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.9e-45 186.8 320 61.2
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 2.9e-45 186.8 320 61.2
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 2.9e-45 186.8 320 61.2
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 2.9e-45 186.8 320 61.2
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 2.9e-45 186.8 320 61.2
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 2.9e-45 186.8 319 63.0
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 5.0e-45 186.0 320 60.9
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 6.5e-45 185.7 320 60.6
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 8.5e-45 185.3 321 58.9
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.5e-44 184.5 314 60.5
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 4.2e-44 183.0 320 60.6
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 5.5e-44 182.6 314 55.7
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 7.2e-44 182.2 324 53.7
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.2e-43 181.4 310 61.0
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.1e-43 180.6 320 60.0
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 4.7e-43 179.5 321 64.8
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 6.1e-43 179.1 318 62.3
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.8e-42 177.6 332 60.2
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 5.2e-42 176.0 327 56.9
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 6.8e-42 175.6 316 67.4
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.2e-41 174.9 307 59.3
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.5e-41 174.5 272 65.8
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.4e-41 173.3 318 59.4
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 3.4e-41 173.3 319 49.2
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 5.7e-41 172.6 307 62.2
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 7.5e-41 172.2 208 74.5
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.7e-40 171.0 208 74.0
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.7e-40 171.0 208 74.0
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.7e-40 171.0 336 57.4
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.2e-40 170.6 314 61.5
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 6.3e-40 169.1 285 65.3
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 6.3e-40 169.1 319 61.4
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 1.1e-39 168.3 318 55.3
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 1.4e-39 167.9 320 62.2
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 1.4e-39 167.9 320 62.2
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 1.8e-39 167.5 310 61.6
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 4.1e-39 166.4 320 58.4
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 7.0e-39 165.6 320 61.6
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 7.0e-39 165.6 319 61.1
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 3.5e-38 163.3 325 55.7
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 3.5e-38 163.3 325 55.7
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 4.5e-38 162.9 318 60.4
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.3e-37 161.4 318 59.7
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.3e-37 161.4 320 54.1
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 1.7e-37 161.0 321 62.0
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.3e-37 160.6 320 54.7
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.9e-37 160.2 329 59.0
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 6.6e-37 159.1 322 58.1
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 6.6e-37 159.1 319 60.5
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 6.6e-37 159.1 335 56.4
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 6.6e-37 159.1 324 59.9
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 8.6e-37 158.7 358 42.7
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.1e-36 158.3 320 60.9
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 1.5e-36 157.9 316 57.9
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.9e-36 157.5 320 46.2
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 9.5e-36 155.2 320 60.0
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.2e-35 154.8 320 68.8
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 3.6e-35 153.3 317 55.5
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 4.7e-35 152.9 323 66.3
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 4.7e-35 152.9 323 66.3
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.7e-35 152.9 307 58.0
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 8.0e-35 152.1 314 56.4
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 2.3e-34 150.6 315 63.5
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 1.2e-33 148.3 326 59.8
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.5e-33 147.9 315 45.7
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 2.0e-33 147.5 316 61.1
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 3.4e-33 146.7 329 51.7
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.7e-32 144.4 318 55.7
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.1e-31 141.7 282 58.9
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 9.2e-31 138.7 329 46.5
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 5.9e-30 136.0 305 54.8
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 7.8e-30 135.6 147 59.9
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 1.3e-29 134.8 320 46.6
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.3e-29 134.0 309 62.5
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.9e-29 133.3 320 57.2
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 5.0e-29 132.9 318 60.1
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 8.6e-29 132.1 317 57.1
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 2.5e-28 130.6 316 61.1
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 9.5e-28 128.6 318 56.0
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.2e-27 128.3 323 47.1
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 2.1e-27 127.5 319 59.9
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 2.1e-27 127.5 319 50.5
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 3.6e-27 126.7 293 56.3
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 4.7e-27 126.3 293 56.3
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 4.7e-27 126.3 318 59.7
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 1.0e-26 125.2 318 59.7
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 1.4e-26 124.8 320 53.4
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 2.3e-26 124.0 322 55.3
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 8.9e-26 122.1 325 52.6
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.5e-25 121.3 317 56.5
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 4.4e-25 119.8 316 54.7
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 7.5e-25 119.0 313 55.0
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 1.7e-24 117.9 247 62.3
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.2e-24 117.5 261 64.4
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 2.9e-24 117.1 325 53.2
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 2.9e-24 117.1 318 53.8
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 3.7e-24 116.7 208 63.5
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 3.7e-24 116.7 316 57.6
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 3.7e-24 116.7 316 57.6
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 6.4e-24 115.9 323 53.3
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.1e-23 115.2 97 57.7
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.9e-23 114.4 307 34.5
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 3.2e-23 113.6 209 50.7
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 5.4e-23 112.8 316 54.4
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 9.2e-23 112.1 317 53.0
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.2e-22 111.7 322 54.0
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 2.7e-22 110.5 318 54.1
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 3.5e-22 110.2 201 56.2
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 6.0e-22 109.4 320 52.8
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 7.8e-22 109.0 315 52.1
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 2.3e-21 107.5 208 50.5
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 2.3e-21 107.5 316 54.1
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 2.3e-21 107.5 327 55.0
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 2.3e-21 107.5 327 55.0
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 2.3e-21 107.5 327 55.0
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 3.9e-21 106.7 316 56.6
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 5.0e-21 106.3 325 52.0
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 5.0e-21 106.3 325 52.0
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 1.1e-20 105.1 316 53.8
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.5e-20 104.8 317 52.4
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 7.3e-20 102.4 325 51.7
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 9.5e-20 102.1 258 61.2
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 2.1e-19 100.9 300 53.7
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 2.3e-18 97.4 317 53.0
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.2e-17 95.1 208 46.2
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.4e-15 88.2 77 61.0
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.9e-15 87.8 78 56.4
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.2e-15 87.0 147 51.7
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 4.6e-14 83.2 177 67.8
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 5.1e-13 79.7 274 64.2
SEGI_36064 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 1.3e-08 65.1 205 50.2
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.7e-08 64.7 100 42.0
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 3.5e-06 57.0 104 57.7


User provided reference genes

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