Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1354.0 650 100.0
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1282.7 650 92.8
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1282.3 650 92.9
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1270.4 643 93.3
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1125.2 652 79.9
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1124.8 651 79.4
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1121.7 651 79.7
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1120.9 653 80.2
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1119.4 651 79.1
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1117.1 651 78.8
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1115.1 642 80.8
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1114.8 650 79.8
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1114.8 691 77.1
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1114.4 651 79.1
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1110.5 650 79.4
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1110.1 651 80.5
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1108.2 648 79.0
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1104.7 652 79.4
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1103.2 651 78.6
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1102.8 649 78.9
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1102.8 652 78.8
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1101.7 639 80.0
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1101.3 651 78.5
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1101.3 646 79.3
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1101.3 651 78.2
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1101.3 650 78.9
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1100.5 651 78.3
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1100.1 640 79.5
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1095.9 654 78.1
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1089.7 646 77.7
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1088.9 641 79.1
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1088.9 651 77.7
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 651 75.9
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1086.6 652 77.6
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1085.1 655 77.1
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1083.6 651 76.7
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1083.2 650 75.7
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1083.2 669 75.5
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 0.0e+00 1078.5 641 76.0
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1077.8 649 76.3
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1076.2 637 78.0
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1075.1 641 78.3
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 4.4e-312 1073.9 650 76.8
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 8.9e-312 1072.8 650 74.2
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 1.3e-311 1072.4 651 75.6
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 1.2e-310 1069.3 662 75.8
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 1.2e-310 1069.3 647 76.7
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 1.3e-309 1065.8 635 79.8
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 2.2e-309 1065.1 650 76.0
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 4.9e-309 1063.9 642 76.0
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 6.3e-309 1063.5 644 78.0
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 1.4e-308 1062.4 682 72.4
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.1e-308 1060.8 653 75.3
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 1.6e-307 1058.9 638 75.9
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 3.5e-307 1057.7 651 75.6
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 7.8e-307 1056.6 725 69.7
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 2.9e-306 1054.7 805 65.3
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 6.6e-306 1053.5 650 75.5
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 1.6e-304 1048.9 652 74.5
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 3.6e-304 1047.7 656 75.2
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 1.4e-303 1045.8 646 73.5
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 4.0e-303 1044.3 668 72.0
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 2.6e-302 1041.6 643 74.7
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 9.8e-302 1039.6 650 72.2
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 3.7e-301 1037.7 649 74.6
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 4.9e-301 1037.3 594 80.1
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 5.4e-300 1033.9 649 74.1
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 1.6e-299 1032.3 650 72.6
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 1.3e-298 1029.2 613 77.5
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 3.0e-298 1028.1 636 74.7
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 5.0e-298 1027.3 649 74.1
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 6.6e-298 1026.9 652 73.5
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 1.5e-297 1025.8 636 74.8
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 3.3e-297 1024.6 649 73.8
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 7.3e-297 1023.5 614 75.9
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 4.7e-296 1020.8 649 73.5
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 6.8e-295 1016.9 647 72.6
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 1.5e-294 1015.8 649 73.7
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 1.5e-294 1015.8 649 73.7
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 1.5e-294 1015.8 649 73.7
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 4.4e-294 1014.2 597 78.6
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 3.7e-293 1011.1 793 62.3
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 1.2e-291 1006.1 646 72.1
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 7.8e-291 1003.4 646 71.4
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 7.5e-286 986.9 598 76.9
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 1.5e-281 972.6 646 70.6
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 1.6e-280 969.1 644 69.3
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 2.3e-274 948.7 652 70.6
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 6.4e-269 930.6 642 70.9
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.6e-267 926.0 558 75.8
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 3.4e-262 908.3 594 70.0
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 1.7e-253 879.4 556 73.2
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 2.3e-250 869.0 575 69.6
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 2.4e-247 859.0 639 62.8
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 2.5e-241 839.0 638 62.1
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 3.8e-237 825.1 640 60.8
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 1.4e-199 700.3 514 66.5
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 1.1e-191 674.1 363 81.5
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 6.4e-168 595.1 371 75.7
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 4.0e-162 575.9 376 70.7
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 2.5e-156 556.6 557 51.0
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 4.3e-156 555.8 372 68.8
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 2.8e-147 526.6 532 51.3
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.5e-121 441.0 241 79.3
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 7.0e-82 309.3 743 30.8
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 4.7e-78 296.6 152 84.2
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 7.3e-63 246.1 245 52.7
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.3e-53 214.5 194 54.1
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 6.9e-29 133.3 72 86.1
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.2e-28 132.5 73 83.6
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 1.9e-23 115.2 65 78.5
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 2.8e-22 111.3 71 66.2
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.8e-21 108.6 70 67.1
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.8e-21 108.6 101 58.4
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 2.2e-19 101.7 64 70.3
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.8e-19 100.9 70 62.9
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 5.5e-18 97.1 95 55.8
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 6.0e-17 93.6 66 69.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 6.0e-17 93.6 66 69.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 6.0e-17 93.6 66 69.7
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 3.4e-12 77.8 101 43.6
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 5.9e-12 77.0 98 46.9
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 2.1e-09 68.6 36 75.0


User provided reference genes

Program Settings