Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 8.7e-79 297.0 157 100.0
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 4.5e-35 151.8 155 52.3
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 4.5e-35 151.8 155 52.9
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 7.7e-35 151.0 157 55.4
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.6e-32 142.1 161 48.4
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 3.1e-28 129.0 156 47.4
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 7.7e-27 124.4 158 46.8
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 7.7e-27 124.4 171 42.7
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.7e-26 123.2 133 50.4
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 2.9e-26 122.5 156 46.2
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 3.2e-25 119.0 133 48.9
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 9.4e-25 117.5 130 46.2
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 3.6e-24 115.5 134 45.5
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 4.7e-24 115.2 160 43.1
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 1.4e-23 113.6 142 40.8
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 8.8e-23 110.9 162 42.6
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 9.8e-22 107.5 157 43.3
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 9.8e-22 107.5 157 43.3
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 1.3e-21 107.1 163 40.5
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 2.8e-21 105.9 133 40.6
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 2.4e-20 102.8 148 43.9
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 4.1e-20 102.1 157 42.0
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 1.2e-19 100.5 156 39.1
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 5.9e-19 98.2 132 40.2
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 5.0e-18 95.1 153 38.6
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 1.1e-17 94.0 138 40.6
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 3.3e-17 92.4 158 34.2
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 2.1e-16 89.7 154 37.0
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 2.1e-16 89.7 136 39.7
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 2.8e-16 89.4 154 37.0
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 2.8e-16 89.4 155 40.0
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 2.8e-16 89.4 133 40.6
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 6.1e-16 88.2 154 37.0
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 6.1e-16 88.2 154 37.0
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 6.1e-16 88.2 154 37.0
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 8.0e-16 87.8 137 38.0
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.0e-15 87.4 135 33.3
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 1.0e-15 87.4 137 39.4
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 1.4e-15 87.0 136 39.0
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 1.8e-15 86.7 155 39.4
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 3.0e-15 85.9 162 34.0
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 3.0e-15 85.9 163 36.8
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 5.2e-15 85.1 135 38.5
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 5.2e-15 85.1 155 38.1
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 5.2e-15 85.1 155 38.1
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 5.2e-15 85.1 155 38.1
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 5.2e-15 85.1 134 38.1
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 6.8e-15 84.7 141 35.5
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 6.8e-15 84.7 147 36.7
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 1.5e-14 83.6 158 36.1
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 2.6e-14 82.8 164 34.1
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 2.6e-14 82.8 138 37.7
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 3.4e-14 82.4 154 35.7
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 7.5e-14 81.3 155 34.2
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 1.3e-13 80.5 148 35.1
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 2.8e-13 79.3 147 32.7
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 3.7e-13 79.0 148 33.8
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 3.7e-13 79.0 148 33.8
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 4.9e-13 78.6 136 36.8
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.1e-12 77.4 138 35.5
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 1.1e-12 77.4 137 35.8
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 1.1e-12 77.4 137 35.8
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 1.4e-12 77.0 137 35.8
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.4e-12 77.0 122 36.1
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 1.4e-12 77.0 137 35.8
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 1.4e-12 77.0 137 35.8
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 1.4e-12 77.0 122 36.1
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 5.4e-12 75.1 143 33.6
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 9.2e-12 74.3 138 35.5
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.2e-11 73.9 138 34.8
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 2.0e-11 73.2 138 34.8
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.0e-11 73.2 159 30.8
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 7.8e-11 71.2 138 36.2
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 7.8e-11 71.2 138 35.5
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 1.0e-10 70.9 151 31.1
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 1.0e-10 70.9 151 32.5
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 1.3e-10 70.5 149 30.2
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 1.7e-10 70.1 139 31.7
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 1.7e-10 70.1 141 31.9
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 2.9e-10 69.3 149 30.9
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 2.9e-10 69.3 152 29.6
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 2.9e-10 69.3 152 33.6
TWI75G0476 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 2.9e-10 69.3 110 34.5
Duzib248G0935 Durio zibethinus HOM05D008070 ORTHO05D001888 5.0e-10 68.6 162 35.2
MELO3C017910.2 Cucumis melo HOM05D005742 ORTHO05D001888 6.6e-10 68.2 160 28.8
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 8.6e-10 67.8 156 32.1
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.1e-09 67.4 138 34.8
QL04p082922 Quercus lobata HOM05D010056 ORTHO05D001888 1.5e-09 67.0 153 30.7
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.9e-09 66.6 100 39.0
QL04p082907 Quercus lobata HOM05D010056 ORTHO05D001888 1.9e-09 66.6 118 30.5
QL04p087995 Quercus lobata HOM05D010056 ORTHO05D001888 1.9e-09 66.6 153 28.8
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.9e-09 66.6 141 31.9
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 2.5e-09 66.2 149 26.8
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 2.5e-09 66.2 149 26.8
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 2.5e-09 66.2 139 32.4
QL04p082952 Quercus lobata HOM05D010056 ORTHO05D001888 2.5e-09 66.2 153 30.7
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 3.3e-09 65.9 138 32.6
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 3.3e-09 65.9 138 32.6
QL04p088745 Quercus lobata HOM05D010056 ORTHO05D001888 3.3e-09 65.9 153 28.8
QL05p047697 Quercus lobata HOM05D010056 ORTHO05D001888 5.6e-09 65.1 153 24.8
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 7.3e-09 64.7 150 29.3
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 9.5e-09 64.3 144 31.9
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 2.1e-08 63.2 142 31.0
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 2.1e-08 63.2 155 29.7
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 2.1e-08 63.2 155 29.7
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.1e-08 63.2 137 32.8
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 2.8e-08 62.8 136 30.9
QL04p083524 Quercus lobata HOM05D010056 ORTHO05D001888 2.8e-08 62.8 153 28.1
QL05p047683 Quercus lobata HOM05D010056 ORTHO05D001888 4.7e-08 62.0 153 22.9
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 8.0e-08 61.2 149 29.5
QL04p078865 Quercus lobata HOM05D010056 ORTHO05D001888 8.0e-08 61.2 155 24.5
QL04p077299 Quercus lobata HOM05D010056 ORTHO05D001888 1.4e-07 60.5 147 29.3
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 1.8e-07 60.1 154 29.2
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.3e-07 59.7 144 30.6
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.3e-07 59.7 144 30.6
QL04p071633 Quercus lobata HOM05D010056 ORTHO05D001888 2.3e-07 59.7 153 27.5
QL05p047917 Quercus lobata HOM05D010056 ORTHO05D001888 2.3e-07 59.7 147 25.2
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 3.0e-07 59.3 145 30.3
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 3.0e-07 59.3 130 33.8
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 3.0e-07 59.3 131 33.6
QL04p078555 Quercus lobata HOM05D010056 ORTHO05D001888 4.0e-07 58.9 124 28.2
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 4.0e-07 58.9 134 32.8
Nn3g16774 Nelumbo nucifera HOM05D008070 ORTHO05D001888 5.2e-07 58.5 167 28.1
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 5.2e-07 58.5 132 28.8
QL04p083215 Quercus lobata HOM05D010056 ORTHO05D001888 5.2e-07 58.5 112 31.2
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 6.8e-07 58.2 150 32.0
QL12p019526 Quercus lobata HOM05D005742 ORTHO05D001888 6.8e-07 58.2 126 31.0
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 1.2e-06 57.4 149 28.2
unitig_22.g6453 Utricularia gibba HOM05D009745 ORTHO05D011350 1.2e-06 57.4 139 32.4
unitig_23.g29657 Utricularia gibba HOM05D009745 ORTHO05D011350 1.2e-06 57.4 139 32.4
unitig_25.g30577 Utricularia gibba HOM05D009745 ORTHO05D011350 1.2e-06 57.4 139 32.4
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.5e-06 57.0 153 28.8
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 2.0e-06 56.6 146 26.7
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 2.6e-06 56.2 150 27.3
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 2.6e-06 56.2 149 28.2
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.6e-06 56.2 146 29.5
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 3.4e-06 55.8 150 27.3
QL03p058712 Quercus lobata HOM05D008070 ORTHO05D001888 3.4e-06 55.8 86 40.7
QL04p076408 Quercus lobata HOM05D010056 ORTHO05D001888 3.4e-06 55.8 153 26.1
PGR083G2154 Punica granatum HOM05D008182 ORTHO05D001888 4.4e-06 55.5 145 29.7
QL04p083387 Quercus lobata HOM05D010056 ORTHO05D001888 4.4e-06 55.5 117 29.1
THA.LOC104817455 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 4.4e-06 55.5 160 30.0
Aqoxy3G02842 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 5.8e-06 55.1 116 31.9
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 5.8e-06 55.1 144 27.1
QL04p066619 Quercus lobata HOM05D010056 ORTHO05D001888 5.8e-06 55.1 123 29.3
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 7.5e-06 54.7 150 27.3
QL04p076283 Quercus lobata HOM05D010056 ORTHO05D001888 7.5e-06 54.7 124 29.0
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 7.5e-06 54.7 151 27.8
Carub.0004s3006 Capsella rubella HOM05D026554 ORTHO05D001888 9.8e-06 54.3 159 28.3
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 9.8e-06 54.3 164 29.3


User provided reference genes

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