Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 2.6e-152 542.0 262 100.0
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 9.0e-113 410.6 262 80.5
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 1.2e-104 383.6 247 78.9
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 5.5e-102 374.8 270 72.6
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 6.1e-77 291.6 186 71.5
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 4.4e-75 285.4 186 71.5
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 5.7e-75 285.0 211 62.6
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 7.4e-75 284.6 183 73.2
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 7.4e-75 284.6 265 54.7
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 9.7e-75 284.3 185 71.9
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 1.3e-74 283.9 215 61.9
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 4.8e-74 282.0 193 68.9
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 6.3e-74 281.6 186 69.4
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 8.2e-74 281.2 236 57.2
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 1.1e-73 280.8 186 69.4
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 1.4e-73 280.4 231 62.8
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 2.4e-73 279.6 239 60.3
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 1.2e-72 277.3 187 69.0
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 2.0e-72 276.6 191 65.4
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 2.6e-72 276.2 267 53.6
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 3.5e-72 275.8 189 69.8
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 3.5e-72 275.8 188 67.6
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 3.5e-72 275.8 187 68.4
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 4.5e-72 275.4 187 66.8
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 4.5e-72 275.4 250 57.2
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 7.7e-72 274.6 247 56.7
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 1.0e-71 274.2 239 59.4
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 1.0e-71 274.2 239 59.4
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 1.3e-71 273.9 188 69.7
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 1.3e-71 273.9 253 55.3
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.7e-71 273.5 225 60.4
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 1.7e-71 273.5 185 67.0
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 2.9e-71 272.7 250 55.2
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 5.0e-71 271.9 195 67.7
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 6.5e-71 271.6 185 66.5
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 1.1e-70 270.8 186 68.8
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 2.5e-70 269.6 197 65.0
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 3.2e-70 269.2 223 59.2
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 4.2e-70 268.9 209 61.2
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 1.6e-69 266.9 185 66.5
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 6.1e-69 265.0 187 66.8
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 1.4e-68 263.8 176 68.8
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 2.3e-68 263.1 188 67.0
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 3.0e-68 262.7 186 62.9
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 5.2e-68 261.9 238 54.6
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 6.8e-68 261.5 233 53.6
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 1.2e-67 260.8 167 71.3
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 1.2e-67 260.8 188 64.4
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 1.5e-67 260.4 259 51.4
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 2.0e-67 260.0 229 55.0
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 4.4e-67 258.8 267 50.9
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 4.4e-67 258.8 232 53.4
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 5.7e-67 258.5 183 63.9
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 7.5e-67 258.1 211 58.8
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 2.8e-66 256.1 183 62.8
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 2.8e-66 256.1 183 66.7
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 8.3e-66 254.6 171 65.5
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 1.1e-65 254.2 185 62.2
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 1.4e-65 253.8 185 62.2
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 3.1e-65 252.7 185 61.1
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 5.3e-65 251.9 280 49.6
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 5.3e-65 251.9 209 55.5
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 5.3e-65 251.9 216 56.9
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 9.1e-65 251.1 249 53.8
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 1.2e-64 250.8 187 60.4
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 5.9e-64 248.4 185 64.3
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 7.7e-64 248.1 211 54.5
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 7.7e-64 248.1 211 54.5
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 2.2e-63 246.5 160 67.5
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 2.2e-63 246.5 170 65.9
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 3.8e-63 245.7 211 54.0
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 5.0e-63 245.4 194 59.3
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 6.5e-63 245.0 156 68.6
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 1.5e-62 243.8 187 60.4
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.9e-62 243.4 181 60.2
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.5e-62 243.0 191 59.7
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.2e-62 242.7 253 51.8
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 3.2e-62 242.7 191 59.7
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.2e-61 240.7 229 52.0
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.2e-61 240.7 156 67.9
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 1.6e-61 240.4 191 59.2
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 3.6e-61 239.2 276 48.6
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 3.6e-61 239.2 179 62.0
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 8.0e-61 238.0 186 58.6
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 1.4e-60 237.3 187 62.6
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 1.4e-60 237.3 184 60.3
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 3.0e-60 236.1 184 58.7
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 3.0e-60 236.1 183 59.0
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 4.0e-60 235.7 183 57.4
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 4.0e-60 235.7 153 66.0
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.2e-59 234.2 161 64.6
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 4.4e-59 232.3 232 49.1
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 5.7e-59 231.9 209 56.5
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 5.0e-55 218.8 184 54.3
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 1.6e-53 213.8 289 41.5
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 4.0e-52 209.1 183 55.2
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 5.2e-52 208.8 125 72.0
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 2.7e-48 196.4 185 50.8
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 1.6e-45 187.2 209 43.1
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 1.0e-44 184.5 204 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 1.4e-41 174.1 145 51.0
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 1.4e-36 157.5 126 59.5
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 3.2e-33 146.4 155 41.3
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 2.1e-32 143.7 114 60.5
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 4.7e-29 132.5 153 40.5
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 4.4e-27 125.9 66 83.3
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 2.3e-23 113.6 104 51.0
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 3.9e-23 112.8 221 31.7
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 6.6e-23 112.1 186 34.9
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.2e-21 107.8 90 57.8
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 4.0e-20 102.8 140 40.0
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-15 88.2 133 37.6
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 4.9e-10 69.3 94 46.8
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 1.4e-09 67.8 32 93.8
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 1.4e-09 67.8 32 93.8
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 9.3e-09 65.1 51 52.9


User provided reference genes

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