Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.7e-67 259.2 130 100.0
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 2.3e-61 238.8 130 92.3
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 2.7e-57 225.3 128 86.7
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 4.5e-57 224.6 127 86.6
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.7e-56 222.6 127 85.0
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 2.3e-56 222.2 130 85.4
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 2.3e-56 222.2 130 85.4
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 2.9e-56 221.9 127 87.4
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.9e-56 221.9 127 87.4
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 3.8e-56 221.5 127 84.3
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.6e-56 220.7 127 86.6
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.6e-56 220.7 130 83.8
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 6.6e-56 220.7 130 83.8
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.6e-56 220.3 127 86.6
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.6e-56 220.3 127 86.6
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.1e-55 219.9 128 86.7
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.1e-55 219.9 130 84.6
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.5e-55 219.5 128 86.7
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.5e-55 219.5 127 83.5
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.5e-55 219.5 127 83.5
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.9e-55 219.2 127 86.6
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 4.2e-55 218.0 125 84.8
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 4.2e-55 218.0 124 85.5
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.5e-55 217.6 130 83.1
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 7.2e-55 217.2 130 83.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 7.2e-55 217.2 127 85.0
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.6e-54 216.1 124 83.9
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.1e-54 215.7 127 85.8
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.1e-54 215.7 130 81.5
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.8e-54 215.3 128 80.5
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.6e-54 214.9 129 82.2
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 4.7e-54 214.5 127 84.3
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 4.7e-54 214.5 125 84.8
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 6.1e-54 214.2 127 79.5
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.8e-53 212.6 128 79.7
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.8e-53 212.6 128 79.7
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 83.5
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.3e-53 212.2 128 81.2
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 2.3e-53 212.2 128 78.9
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.3e-53 212.2 128 79.7
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.0e-53 211.8 128 79.7
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 78.7
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 81.9
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 5.2e-53 211.1 128 79.7
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 5.2e-53 211.1 128 79.7
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 5.2e-53 211.1 128 79.7
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 5.2e-53 211.1 127 81.1
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 5.2e-53 211.1 124 83.1
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 6.8e-53 210.7 124 83.1
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 6.8e-53 210.7 130 81.5
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 8.9e-53 210.3 128 79.7
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 8.9e-53 210.3 124 81.5
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 8.9e-53 210.3 124 81.5
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.2e-52 209.9 128 78.9
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.2e-52 209.9 128 78.9
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.0e-52 209.1 128 80.5
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.0e-52 209.1 124 83.9
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 2.0e-52 209.1 124 83.1
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 2.0e-52 209.1 127 81.1
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.6e-52 208.8 127 78.0
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.6e-52 208.8 127 79.5
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 3.4e-52 208.4 131 80.9
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 77.2
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 4.4e-52 208.0 129 76.0
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 81.1
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 79.5
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 7.5e-52 207.2 127 78.7
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 79.0
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 80.3
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 78.7
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 79.5
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 80.6
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 80.6
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 82.3
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 78.7
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 77.2
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.2e-51 205.7 124 79.0
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.8e-51 205.3 129 75.2
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.8e-51 205.3 127 80.3
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 4.9e-51 204.5 129 77.5
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 4.9e-51 204.5 125 80.0
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 4.9e-51 204.5 122 81.1
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 8.3e-51 203.8 124 77.4
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.4e-50 203.0 124 77.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.8e-50 202.6 128 78.9
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 78.7
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 78.7
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 3.1e-50 201.8 129 74.4
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 3.1e-50 201.8 124 80.6
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.1e-50 201.8 128 77.3
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 3.1e-50 201.8 125 79.2
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 3.1e-50 201.8 124 79.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.1e-50 201.8 124 79.8
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 5.4e-50 201.1 120 80.0
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 5.4e-50 201.1 124 77.4
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 7.0e-50 200.7 120 79.2
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 7.0e-50 200.7 124 79.0
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 9.2e-50 200.3 129 77.5
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 2.0e-49 199.1 124 79.0
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 3.5e-49 198.4 131 77.1
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 3.5e-49 198.4 125 76.8
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 5.9e-49 197.6 124 79.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.3e-48 196.4 127 76.4
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 5.0e-48 194.5 120 77.5
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 6.6e-48 194.1 124 74.2
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 8.6e-48 193.7 125 74.4
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 2.5e-47 192.2 127 77.2
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 6.1e-46 187.6 124 71.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.3e-43 179.9 167 58.7
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.2e-43 179.1 109 76.1
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 7.0e-42 174.1 128 71.9
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 6.0e-41 171.0 106 79.2
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 1.1e-39 166.8 129 69.0
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 4.3e-39 164.9 89 93.3
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.6e-38 162.9 96 78.1
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.5e-36 156.4 109 72.5
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.9e-32 141.7 82 78.0
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.6e-31 137.9 82 78.0
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 7.8e-25 117.5 76 75.0
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 3.0e-24 115.5 74 77.0
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.1e-23 113.6 130 55.4
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.5e-23 113.2 98 59.2
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.9e-23 112.8 89 62.9
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 4.7e-22 108.2 88 56.8
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.5e-20 103.2 70 75.7
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.4e-20 101.7 61 78.7
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.8e-19 98.6 70 74.3
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.9e-18 96.3 57 80.7
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 5.4e-18 94.7 82 54.9
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 5.1e-16 88.2 51 88.2
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 2.4e-13 79.3 114 47.4
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.7e-11 73.2 99 41.4
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.1e-08 61.6 36 80.6
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 5.1e-08 61.6 59 45.8
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.3e-07 58.5 38 65.8


User provided reference genes

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