Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 1.2e-287 992.6 557 100.0
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 6.7e-182 641.3 592 65.0
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 2.9e-177 625.9 625 62.6
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 4.3e-165 585.5 607 60.8
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 3.4e-154 549.3 620 59.2
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 9.4e-43 179.1 557 35.2
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 6.1e-42 176.4 675 32.1
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 7.2e-35 152.9 586 33.3
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 2.1e-34 151.4 578 31.8
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 2.1e-34 151.4 670 31.8
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 4.4e-32 143.7 583 30.5
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 5.7e-32 143.3 467 33.0
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 5.7e-32 143.3 660 31.1
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 7.4e-32 142.9 573 31.2
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.3e-31 142.1 562 32.2
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 1.4e-30 138.7 643 30.9
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.4e-30 138.7 573 31.4
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 2.4e-30 137.9 579 31.3
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 5.3e-30 136.7 575 32.5
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 7.0e-30 136.3 582 31.6
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.6e-29 135.2 562 30.4
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.6e-29 135.2 551 29.6
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 2.0e-29 134.8 572 31.3
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 3.8e-28 130.6 600 28.3
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 3.8e-28 130.6 571 31.7
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 5.0e-28 130.2 548 30.3
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.5e-28 129.8 593 29.7
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.1e-27 129.0 635 28.8
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 1.5e-27 128.6 564 30.7
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.2e-26 125.6 597 30.0
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 3.6e-26 124.0 576 30.6
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 8.0e-26 122.9 567 30.9
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 4.0e-25 120.6 566 32.0
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.2e-25 120.2 588 29.4
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 5.2e-25 120.2 499 30.7
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 6.7e-25 119.8 612 29.9
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 1.5e-24 118.6 459 30.1
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 1.5e-24 118.6 614 27.4
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 2.0e-24 118.2 576 30.0
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 3.3e-24 117.5 541 29.2
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 7.5e-24 116.3 563 30.6
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 1.3e-23 115.5 560 28.4
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.3e-23 115.5 597 29.5
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 2.8e-23 114.4 531 28.2
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 2.8e-23 114.4 586 29.2
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 6.3e-23 113.2 496 30.4
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 1.1e-22 112.5 656 28.2
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 1.4e-22 112.1 604 28.5
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 1.4e-22 112.1 584 29.6
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 5.3e-22 110.2 591 28.8
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 7.0e-22 109.8 598 27.4
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 1.2e-21 109.0 515 30.1
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 2.0e-21 108.2 522 29.1
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 7.7e-21 106.3 615 28.1
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 7.7e-21 106.3 532 29.7
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.0e-20 105.9 251 35.1
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 1.0e-20 105.9 585 27.5
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 1.0e-20 105.9 589 26.8
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 1.0e-20 105.9 584 29.6
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 1.3e-20 105.5 503 30.0
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 2.2e-20 104.8 626 30.5
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 8.5e-20 102.8 581 28.6
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.1e-19 102.4 531 29.6
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 1.9e-19 101.7 635 27.7
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 4.2e-19 100.5 528 27.3
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 9.4e-19 99.4 544 29.8
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.6e-18 98.6 566 27.9
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 2.1e-18 98.2 644 25.5
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 3.6e-18 97.4 591 28.6
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 8.0e-18 96.3 557 29.4
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 8.0e-18 96.3 547 28.0
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 1.8e-17 95.1 525 29.1
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 3.0e-17 94.4 519 27.9
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 5.2e-17 93.6 508 29.5
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 6.8e-17 93.2 525 27.2
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 1.2e-16 92.4 390 30.8
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 1.2e-16 92.4 694 27.4
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 1.5e-16 92.0 563 25.2
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 2.0e-16 91.7 583 26.6
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 2.6e-16 91.3 539 28.2
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 2.6e-16 91.3 508 28.5
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 3.4e-16 90.9 524 26.9
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 3.4e-16 90.9 524 26.9
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 7.5e-16 89.7 538 28.3
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 7.5e-16 89.7 662 27.2
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 9.8e-16 89.4 185 33.5
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 1.3e-15 89.0 521 27.6
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.3e-15 89.0 539 29.5
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 1.3e-15 89.0 524 27.9
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 2.8e-15 87.8 519 27.4
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 4.8e-15 87.0 569 29.9
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 4.8e-15 87.0 581 24.6
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 6.3e-15 86.7 174 43.1
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 8.3e-15 86.3 452 26.5
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 8.3e-15 86.3 548 25.0
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.1e-14 85.9 434 27.9
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 1.4e-14 85.5 634 26.2
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 2.4e-14 84.7 77 53.2
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 2.4e-14 84.7 531 29.0
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 3.1e-14 84.3 108 46.3
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 4.1e-14 84.0 132 40.2
Gohir.D11G344100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.1e-14 84.0 459 27.5
Gorai.007G374500 Gossypium raimondii HOM05D003265 ORTHO05D003819 4.1e-14 84.0 459 27.5
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 4.1e-14 84.0 166 39.2
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 9.1e-14 82.8 568 26.6
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 1.2e-13 82.4 548 26.3
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.6e-13 82.0 533 26.1
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 7.7e-13 79.7 541 29.0
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 1.0e-12 79.3 555 27.6
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 1.0e-12 79.3 224 32.6
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 5.0e-12 77.0 654 26.6
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 6.5e-12 76.6 570 25.8
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.9e-11 75.1 536 27.6
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 3.2e-11 74.3 523 27.7
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 5.5e-11 73.6 570 28.8
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 7.2e-11 73.2 522 24.9
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 7.2e-11 73.2 590 26.3
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 9.5e-11 72.8 552 27.5
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 1.6e-10 72.0 652 23.6
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 4.7e-10 70.5 431 25.8
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 8.0e-10 69.7 583 26.1
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 1.0e-09 69.3 430 27.7
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 1.4e-09 68.9 642 23.8
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 2.3e-09 68.2 528 26.7
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 2.3e-09 68.2 540 26.5
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 8.8e-09 66.2 474 28.1
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 1.2e-08 65.9 634 24.1
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.6e-08 64.7 595 26.4
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 2.6e-08 64.7 71 52.1
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 7.5e-08 63.2 140 31.4
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 9.8e-08 62.8 555 25.8
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 9.8e-08 62.8 464 26.7
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 9.8e-08 62.8 84 45.2
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 9.8e-08 62.8 84 45.2
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 9.8e-08 62.8 378 25.9
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 1.3e-07 62.4 506 25.7
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.7e-07 62.0 499 26.9
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.8e-07 61.2 518 27.2
Solyc06g005660.3 Solanum lycopersicum HOM05D014857 ORTHO05D015078 2.8e-07 61.2 431 27.6
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.7e-07 60.8 114 37.7
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.9e-07 60.5 114 38.6
DCAR_015272 Daucus carota HOM05D003265 ORTHO05D015078 4.9e-07 60.5 576 27.6
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 4.9e-07 60.5 85 44.7
AT2G37070 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 6.3e-07 60.1 489 27.0
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 6.3e-07 60.1 549 24.8
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 8.3e-07 59.7 473 26.8
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 8.3e-07 59.7 509 25.3
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.1e-06 59.3 555 26.5
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 1.1e-06 59.3 463 28.7
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.4e-06 58.9 523 26.0
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 2.4e-06 58.2 492 26.8
Manes.09G080700 Manihot esculenta HOM05D003265 ORTHO05D003819 2.4e-06 58.2 254 31.1
Sopen06g001640 Solanum pennellii HOM05D014857 ORTHO05D015078 2.4e-06 58.2 427 28.8
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 3.1e-06 57.8 514 26.1
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 3.1e-06 57.8 353 25.2
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 4.1e-06 57.4 425 24.5
CDE09G0374 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 9.2e-06 56.2 146 36.3
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 9.2e-06 56.2 90 44.4
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 9.2e-06 56.2 653 23.0


User provided reference genes

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