Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 9.5e-93 343.6 185 100.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.5e-55 218.8 215 60.0
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.4e-40 170.2 217 49.8
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.0e-29 133.3 119 59.7
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.3e-28 128.3 210 44.3
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 8.2e-28 127.9 206 47.1
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.4e-27 126.3 221 41.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.4e-27 126.3 233 37.3
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.2e-26 124.0 128 51.6
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.0e-25 120.9 132 48.5
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.0e-25 120.9 205 49.8
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-25 120.2 220 39.5
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 8.5e-25 117.9 224 43.3
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.5e-24 117.1 174 44.8
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 2.5e-24 116.3 127 49.6
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 9.4e-24 114.4 120 51.7
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.6e-23 113.6 97 63.9
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 2.7e-23 112.8 123 49.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 3.6e-23 112.5 126 48.4
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 4.7e-23 112.1 116 50.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 6.1e-23 111.7 230 43.0
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 8.0e-23 111.3 278 35.3
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 8.0e-23 111.3 260 40.8
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 8.0e-23 111.3 122 50.8
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 8.0e-23 111.3 203 43.3
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.0e-22 110.9 134 47.0
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.0e-22 110.9 173 42.8
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.3e-22 109.8 101 51.5
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 6.7e-22 108.2 123 49.6
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 8.8e-22 107.8 104 54.8
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.0e-21 106.7 120 44.2
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 2.6e-21 106.3 217 43.3
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 9.7e-21 104.4 117 48.7
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-20 103.6 221 40.7
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.7e-20 103.6 216 41.2
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.2e-20 103.2 60 80.0
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.8e-20 102.8 127 48.0
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.8e-20 102.8 113 49.6
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.8e-20 102.8 113 49.6
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 3.7e-20 102.4 230 35.7
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 3.7e-20 102.4 230 35.7
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 4.8e-20 102.1 210 41.4
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 4.8e-20 102.1 118 47.5
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 6.3e-20 101.7 114 45.6
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.4e-19 100.5 123 48.0
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.4e-19 100.5 199 36.7
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.4e-19 99.8 60 78.3
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 7.0e-19 98.2 205 43.9
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 9.1e-19 97.8 112 45.5
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 9.1e-19 97.8 120 44.2
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 9.1e-19 97.8 120 44.2
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 9.1e-19 97.8 112 45.5
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 9.1e-19 97.8 59 76.3
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.0e-18 96.7 222 43.7
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.0e-18 96.7 125 44.8
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 3.5e-18 95.9 60 75.0
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.5e-18 95.9 57 75.4
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.5e-18 95.9 57 75.4
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.5e-18 95.9 57 75.4
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 4.5e-18 95.5 228 36.8
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 7.7e-18 94.7 60 71.7
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.0e-17 94.4 68 72.1
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.3e-17 94.0 60 73.3
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-17 94.0 124 41.9
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.7e-17 93.6 82 59.8
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.7e-17 93.6 68 72.1
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-17 93.6 116 43.1
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.7e-17 93.6 116 43.1
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.7e-17 93.6 72 65.3
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.7e-17 93.6 121 46.3
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.7e-17 93.6 60 71.7
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.2e-17 93.2 184 43.5
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.1e-16 90.9 61 70.5
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.1e-16 90.9 60 66.7
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.9e-16 90.1 239 31.8
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.5e-16 89.7 230 40.9
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.5e-16 89.7 60 70.0
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.5e-16 89.7 215 40.0
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 5.5e-16 88.6 110 42.7
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 7.2e-16 88.2 55 70.9
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.2e-16 88.2 223 39.0
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.2e-15 87.4 55 70.9
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.7e-15 86.3 61 63.9
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 3.6e-15 85.9 217 41.9
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 4.7e-15 85.5 229 34.1
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 8.0e-15 84.7 60 68.3
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 8.0e-15 84.7 60 68.3
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-14 84.0 212 39.2
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.4e-14 84.0 91 49.5
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.8e-14 83.6 224 31.7
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 4.0e-14 82.4 58 69.0
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 6.8e-14 81.6 221 39.4
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 6.8e-14 81.6 209 39.7
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 8.8e-14 81.3 219 38.8
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 8.8e-14 81.3 67 64.2
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-13 80.9 156 37.2
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.2e-13 80.9 60 65.0
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.2e-13 80.9 60 70.0
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.5e-13 80.5 215 36.7
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.5e-13 80.5 243 36.2
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 2.6e-13 79.7 243 31.7
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 3.4e-13 79.3 60 65.0
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.4e-13 79.3 49 69.4
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.4e-13 79.3 210 33.3
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 7.5e-13 78.2 52 76.9
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.8e-13 77.8 218 38.1
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 4.8e-12 75.5 102 43.1
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 4.8e-12 75.5 198 37.9
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 4.8e-12 75.5 45 73.3
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 6.3e-12 75.1 77 49.4
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 6.3e-12 75.1 77 49.4
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 8.3e-12 74.7 42 81.0
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 8.3e-12 74.7 205 34.1
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 8.3e-12 74.7 55 65.5
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 8.3e-12 74.7 47 72.3
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.4e-11 73.9 60 55.0
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.4e-11 73.9 232 37.1
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.4e-11 73.9 49 75.5
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.4e-11 73.2 42 81.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 4.1e-11 72.4 56 58.9
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.1e-11 72.4 41 82.9
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 4.1e-11 72.4 42 83.3
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 7.0e-11 71.6 68 61.8
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 7.0e-11 71.6 52 61.5
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 9.1e-11 71.2 42 73.8
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 9.1e-11 71.2 41 78.0
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.0e-10 70.1 39 79.5
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.0e-10 70.1 210 38.6
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.0e-10 70.1 57 57.9
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 2.7e-10 69.7 211 37.0
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 3.5e-10 69.3 47 61.7
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 3.5e-10 69.3 57 63.2
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 5.9e-10 68.6 94 43.6
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 7.7e-10 68.2 54 61.1
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 7.7e-10 68.2 196 35.2
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.0e-09 67.8 51 56.9
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 2.3e-09 66.6 227 35.2
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.0e-09 65.5 60 53.3
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 8.6e-09 64.7 54 53.7
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 1.1e-08 64.3 37 78.4
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.5e-08 63.9 37 78.4
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 3.2e-08 62.8 38 71.1
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 4.2e-08 62.4 234 28.6
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 7.2e-08 61.6 54 48.1
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.6e-07 60.5 64 50.0
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 3.6e-07 59.3 59 50.8
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 8.0e-07 58.2 50 54.0
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.0e-06 57.8 37 73.0
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.4e-06 57.4 63 49.2
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.4e-06 57.4 66 47.0
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.8e-06 57.0 212 36.3
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 2.3e-06 56.6 61 49.2
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.3e-06 56.6 41 63.4
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 4.0e-06 55.8 52 51.9
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 4.0e-06 55.8 127 34.6
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 5.2e-06 55.5 177 29.4
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 6.8e-06 55.1 94 37.2
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 6.8e-06 55.1 189 31.2


User provided reference genes

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