Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 5.8e-136 487.6 262 100.0
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 2.5e-131 472.2 262 96.2
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.5e-131 472.2 262 95.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 9.6e-131 470.3 262 95.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.6e-130 469.5 262 96.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.8e-130 468.8 262 95.4
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 89.3
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 89.3
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 89.3
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.9e-123 446.0 262 89.3
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.3e-123 444.9 262 88.9
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.3e-123 444.9 262 88.9
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 88.5
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 88.2
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 87.8
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 8.1e-122 440.7 262 87.8
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 87.4
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 87.4
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 87.4
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.0
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 86.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 6.9e-121 437.6 261 87.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 9.0e-121 437.2 262 87.4
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 87.4
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 87.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 86.6
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 86.3
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 3.8e-119 431.8 263 85.2
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 87.0
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 85.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 85.9
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 84.0
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 86.3
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 85.1
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.4e-118 429.1 263 84.8
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 84.4
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.9
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.5
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.1
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 9.3e-118 427.2 263 84.0
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.1
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.7
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.1
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.4
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 83.6
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 85.1
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 2.7e-117 425.6 263 84.4
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 83.2
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.0
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 85.1
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 83.6
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.0
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 83.6
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 82.8
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 82.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 83.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 82.8
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.2
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 82.8
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 83.2
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.0
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 85.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 82.8
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 83.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 83.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 82.8
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 83.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 83.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 83.2
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 82.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 81.7
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 83.2
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 84.7
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 82.1
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 4.3e-115 418.3 259 85.3
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 82.8
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 82.8
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 82.8
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 82.4
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 83.6
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 82.1
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 80.9
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 80.9
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 3.1e-113 412.1 263 81.7
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 9.0e-113 410.6 253 82.2
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.2e-112 410.2 264 81.1
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 81.3
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 7.6e-112 407.5 264 81.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.7e-111 406.4 262 82.8
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 2.5e-110 402.5 264 80.7
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 5.5e-110 401.4 263 80.6
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.8
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.8
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.8
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.8
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 80.2
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 79.8
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.1e-109 399.4 253 83.4
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 79.8
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 79.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 79.8
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 4.6e-109 398.3 262 79.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.4
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.4
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 79.8
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 79.0
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 79.0
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.3e-108 396.0 263 79.5
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.3e-108 396.0 263 79.5
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.3e-108 396.0 263 79.5
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.0e-108 395.6 247 85.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 3.9e-108 395.2 263 80.2
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 3.9e-108 395.2 247 85.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 79.0
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 5.1e-108 394.8 263 79.1
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 8.7e-108 394.0 263 80.2
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.9e-107 392.9 263 80.2
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.5e-107 392.5 239 84.5
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.1e-105 387.1 270 75.6
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 78.2
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 2.4e-105 386.0 270 75.2
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 9.0e-105 384.0 263 79.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 5.8e-104 381.3 248 80.6
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.0e-103 380.6 263 78.7
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 5.5e-102 374.8 262 76.7
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.9e-101 370.9 263 76.4
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 9.7e-99 364.0 264 75.8
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 9.7e-99 364.0 262 75.6
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 4.1e-97 358.6 218 86.7
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 9.0e-97 357.5 249 75.1
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.8e-95 352.1 241 79.3
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 7.2e-94 347.8 263 68.8
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 7.2e-94 347.8 210 85.7
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 6.1e-93 344.7 219 79.9
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.9e-93 344.4 234 77.8
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.5e-91 340.1 223 75.8
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 9.7e-91 337.4 262 70.2
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.2e-90 336.3 214 81.8
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.4e-89 332.8 250 69.2
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 4.2e-86 322.0 219 74.4
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.7e-79 300.1 267 60.3
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.8e-79 298.9 250 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 6.5e-79 298.1 218 69.7
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.7e-77 292.7 247 67.6
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 3.6e-77 292.4 204 76.5
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.7e-77 292.0 232 64.2
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 3.0e-76 289.3 250 65.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 3.1e-73 279.3 208 68.3
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 5.3e-73 278.5 263 61.6
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.2e-71 273.1 262 62.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 5.0e-71 271.9 270 57.0
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 4.8e-66 255.4 211 62.6
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.0e-60 235.7 235 61.7
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.0e-56 223.4 243 51.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.1e-54 217.6 130 84.6
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-52 211.1 138 81.9
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.8e-52 210.3 245 50.2
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 8.3e-50 201.4 120 84.2
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 9.5e-46 188.0 118 84.7
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.3e-44 183.3 179 57.5
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.1e-37 160.2 191 51.3
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.6e-35 153.3 127 67.7
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 4.3e-30 136.0 96 71.9
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.7e-24 116.7 69 87.0


User provided reference genes

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