Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 3854.7 1952 100.0
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 3419.8 1966 88.8
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 3404.0 2072 84.7
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 3262.2 2076 82.1
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2686.4 1991 70.6
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2659.4 1993 69.7
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2644.8 2007 69.3
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2629.0 2032 68.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2592.4 2023 68.0
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2568.1 1991 67.8
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2564.6 1987 68.3
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2543.1 2116 65.0
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2534.6 1989 67.0
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2532.3 1981 67.5
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2515.0 1984 66.2
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2506.9 1984 66.9
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2504.2 2002 65.8
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2501.5 1981 65.5
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2497.2 1993 65.9
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2488.8 1984 66.3
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2476.8 1983 66.2
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2475.3 2000 65.7
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2473.0 1983 65.8
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2466.8 1986 65.4
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2466.8 1986 65.4
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2464.9 1993 65.6
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2464.1 1983 65.5
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2459.5 2007 65.2
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2439.8 1990 64.9
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2413.3 1997 64.0
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2407.9 1990 64.8
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2402.9 1992 64.7
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2401.3 1980 64.8
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2401.3 2031 63.6
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2399.8 1988 64.0
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2397.1 1988 64.6
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2393.2 1991 64.3
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2392.5 2051 62.1
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2391.7 1991 63.7
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2388.2 1991 64.4
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2385.1 1998 63.4
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2350.9 1976 63.0
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2334.7 1975 63.4
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2307.7 1984 63.2
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2299.6 1840 66.0
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2280.4 2002 62.1
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2232.2 2029 61.2
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2222.2 2004 60.4
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2221.8 2004 60.4
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2219.5 1993 59.5
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2215.7 2003 60.5
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2213.7 1997 60.9
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2210.3 2006 59.6
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2189.5 2047 58.6
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2189.1 2059 59.6
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2181.8 2000 59.8
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2177.5 1979 59.0
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2169.4 1988 59.9
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2168.3 2004 58.2
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2154.0 1978 59.8
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2153.3 1990 58.6
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2139.8 1994 58.4
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2139.4 1993 58.7
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2138.2 1991 58.3
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2130.1 1989 58.2
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2128.6 1670 68.1
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2124.7 1988 59.3
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2121.3 1984 57.3
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2112.4 1992 57.6
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2105.1 1989 57.9
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2091.2 1975 57.5
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2084.7 1991 59.0
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2066.6 2002 56.6
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2050.4 1981 56.8
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2048.9 2003 56.1
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2043.9 1971 56.1
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2043.1 1975 56.5
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2040.0 2013 55.8
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2038.1 1998 56.2
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2032.7 1979 56.3
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2027.3 1976 56.0
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2023.4 2010 55.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2006.9 2008 57.1
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1998.0 2141 53.4
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1994.5 1905 58.7
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1915.6 1883 56.6
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1892.1 1774 57.8
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1887.5 1972 54.0
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1834.3 1663 60.0
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1796.6 2041 51.1
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1768.8 1755 56.1
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1693.7 1418 65.0
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1659.8 1355 65.2
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1642.5 1492 59.6
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1597.8 1998 47.3
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1592.8 1717 54.2
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1521.1 1231 64.3
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1390.6 1903 44.3
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1352.8 2022 43.3
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1308.1 1186 61.5
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1298.5 1602 47.0
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1260.4 1190 58.9
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1232.2 1417 49.5
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1102.4 776 72.8
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 4.5e-310 1068.9 773 69.9
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 2.3e-306 1056.6 775 69.7
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.2e-283 981.1 980 53.8
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.4e-279 967.6 1049 51.8
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 6.4e-272 942.2 835 60.4
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 2.4e-266 923.7 2146 33.6
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.2e-249 868.2 2145 32.2
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.3e-245 854.0 1181 44.5
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 2.4e-242 844.0 1286 43.4
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.7e-200 704.9 1985 31.4
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 3.2e-199 700.7 1020 42.5
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 7.8e-177 626.3 429 70.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 1.5e-175 622.1 1926 30.1
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.6e-172 611.3 598 54.0
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 4.3e-167 594.0 653 53.9
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 2.0e-156 558.5 538 56.9
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 8.4e-155 553.1 1609 31.6
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.6e-140 505.0 320 75.3
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 3.9e-120 438.0 502 51.0
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.8e-107 394.8 758 38.8
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 6.5e-107 394.0 317 65.9
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 3.0e-104 385.2 515 47.4
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 4.5e-100 371.3 378 58.5
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 6.7e-96 357.5 367 52.9
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 9.7e-95 353.6 283 64.3
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.2e-92 346.7 356 51.7
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.6e-92 345.5 213 78.4
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 5.9e-84 317.8 205 74.1
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.1e-82 313.5 243 68.7
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 1.1e-77 297.0 188 78.7
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 4.0e-72 278.5 165 80.6
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 3.9e-67 261.9 162 79.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-65 256.9 1105 25.2
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 4.0e-64 251.9 211 66.8
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.8e-63 248.1 159 75.5
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.2e-60 240.4 294 48.6
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.7e-59 236.5 298 46.6
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.4e-55 222.2 164 67.1
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.9e-50 206.5 245 51.4
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.8e-49 202.6 125 74.4
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 8.9e-48 197.6 410 38.0
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 1.2e-47 197.2 387 40.3
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 8.3e-46 191.0 262 45.8
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 8.6e-43 181.0 326 40.5
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.2e-39 170.6 605 28.6
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.0e-39 169.9 319 36.7
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 1.3e-38 167.2 122 73.0
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 9.3e-29 134.4 90 72.2
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.7e-27 130.2 72 77.8
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 3.9e-27 129.0 465 33.1
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 5.1e-27 128.6 149 53.0
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 2.1e-20 106.7 85 67.1
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 2.1e-20 106.7 85 67.1
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 2.3e-19 103.2 109 56.0
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.5e-18 100.5 119 55.5
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.9e-18 100.1 67 74.6
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 4.3e-18 99.0 119 54.6
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.6e-17 97.1 115 48.7
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 2.1e-17 96.7 140 46.4
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 2.4e-16 93.2 57 70.2
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 3.4e-15 89.4 44 88.6
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 3.4e-15 89.4 44 88.6
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.3e-14 87.4 166 38.0
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.4e-13 84.0 159 39.6
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 6.0e-12 78.6 88 53.4
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 1.9e-10 73.6 100 43.0
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 7.6e-07 61.6 54 53.7
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 7.6e-07 61.6 88 42.0
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 8.4e-06 58.2 67 37.3


User provided reference genes

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