Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.1e-150 536.6 266 100.0
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.8e-124 449.5 262 86.6
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 4.1e-121 438.3 261 85.4
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 2.8e-114 415.6 261 82.8
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 7.7e-112 407.5 255 82.0
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 4.1e-81 305.4 266 64.3
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 1.5e-75 287.0 278 60.4
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 2.3e-71 273.1 264 60.6
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.5e-70 270.4 270 58.1
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 2.8e-69 266.2 277 58.5
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 4.0e-68 262.3 258 61.6
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.2e-67 260.8 262 58.8
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 2.2e-66 256.5 267 57.3
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 2.9e-66 256.1 267 57.3
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.4e-65 253.8 286 53.5
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.2e-65 252.7 262 58.0
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.3e-63 247.3 290 51.0
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 6.6e-63 245.0 269 55.8
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 1.1e-62 244.2 273 56.4
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.6e-61 240.4 273 54.2
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 6.2e-61 238.4 269 53.5
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 1.1e-60 237.7 269 52.4
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 1.2e-59 234.2 273 53.1
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 2.0e-59 233.4 263 52.1
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 4.5e-59 232.3 262 54.6
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 8.4e-58 228.0 278 50.7
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 1.1e-57 227.6 234 56.4
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 1.4e-57 227.3 275 49.5
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.2e-56 224.2 261 53.3
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 2.7e-56 223.0 274 50.4
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 2.3e-55 219.9 272 50.4
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 8.7e-55 218.0 271 51.7
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 1.5e-54 217.2 266 50.4
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.5e-54 217.2 272 51.8
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.5e-54 217.2 273 49.5
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 2.5e-54 216.5 273 48.0
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 2.5e-54 216.5 263 51.3
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 5.6e-54 215.3 243 53.1
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 5.6e-54 215.3 243 53.1
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.3e-53 214.2 271 48.0
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.3e-53 214.2 289 48.4
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 2.1e-53 213.4 270 48.1
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 2.8e-53 213.0 276 48.2
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 3.7e-53 212.6 276 47.8
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 3.7e-53 212.6 277 48.7
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 3.7e-53 212.6 279 50.2
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 4.8e-53 212.2 272 51.5
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 6.2e-53 211.8 284 47.9
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 1.4e-52 210.7 274 48.9
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.4e-52 209.9 262 48.1
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 6.9e-52 208.4 273 49.1
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 9.0e-52 208.0 272 50.4
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.0e-51 206.8 272 47.8
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 5.8e-51 205.3 266 48.1
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.7e-50 203.8 276 46.4
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 2.2e-50 203.4 273 50.2
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.8e-50 202.6 291 47.8
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 4.9e-50 202.2 272 46.3
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 8.4e-50 201.4 278 47.1
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.1e-49 201.1 271 46.5
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 5.5e-49 198.7 278 47.8
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 7.1e-49 198.4 264 47.7
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 1.2e-48 197.6 260 47.7
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 2.1e-48 196.8 232 52.6
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 2.1e-48 196.8 273 48.0
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 6.0e-48 195.3 270 48.1
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 6.0e-48 195.3 277 46.2
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.3e-47 194.1 268 47.0
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.8e-47 193.7 270 45.9
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 6.7e-47 191.8 253 47.8
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.1e-46 191.0 253 47.4
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.9e-46 190.3 276 47.1
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 7.4e-46 188.3 277 47.3
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 1.3e-45 187.6 268 45.9
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.1e-45 186.8 286 45.1
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.1e-45 186.8 270 48.1
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 2.8e-45 186.4 277 47.3
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 9.0e-44 181.4 251 45.4
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 9.0e-44 181.4 276 45.7
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 9.0e-44 181.4 260 46.9
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 9.0e-44 181.4 276 45.7
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 1.2e-43 181.0 274 45.3
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 1.5e-43 180.6 270 47.0
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 1.5e-43 180.6 255 45.5
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 2.0e-43 180.3 300 43.0
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 4.5e-43 179.1 268 45.1
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.5e-43 179.1 276 44.9
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 5.8e-43 178.7 264 45.5
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 7.6e-43 178.3 282 44.3
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 7.6e-43 178.3 275 43.6
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 7.6e-43 178.3 259 47.1
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 1.0e-42 177.9 280 45.0
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 1.0e-42 177.9 287 46.7
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.0e-42 177.9 279 43.4
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.3e-42 177.6 275 45.5
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 2.2e-42 176.8 263 46.4
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 2.2e-42 176.8 272 45.6
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 2.9e-42 176.4 259 47.1
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.9e-42 176.4 284 45.4
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.8e-42 176.0 280 43.9
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 3.8e-42 176.0 255 43.9
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 4.9e-42 175.6 274 42.7
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.1e-41 174.5 261 43.7
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 1.4e-41 174.1 260 44.6
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.4e-41 174.1 273 42.9
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.4e-41 174.1 273 42.9
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 1.9e-41 173.7 272 44.9
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 1.9e-41 173.7 261 42.5
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 2.5e-41 173.3 265 45.3
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.5e-41 172.2 280 45.0
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 9.3e-41 171.4 274 45.3
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 9.3e-41 171.4 261 47.5
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.6e-40 170.6 268 41.8
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.6e-40 170.6 265 43.8
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 3.5e-40 169.5 266 45.1
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 1.0e-39 167.9 266 45.5
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.0e-39 167.9 267 44.9
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 6.7e-39 165.2 210 52.4
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 2.5e-38 163.3 288 42.0
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 5.7e-38 162.2 223 48.9
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 5.7e-38 162.2 259 45.2
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 7.4e-38 161.8 184 55.4
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.7e-37 159.5 257 42.4
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 4.8e-37 159.1 201 50.7
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 1.4e-36 157.5 187 52.9
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 1.8e-36 157.1 277 40.4
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.0e-35 153.7 257 42.0
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 7.6e-35 151.8 182 49.5
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.2e-34 150.2 235 43.4
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.9e-33 147.1 272 42.6
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 1.0e-31 141.4 356 36.8
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 3.0e-31 139.8 270 35.9
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 7.4e-30 135.2 272 37.1
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 2.8e-29 133.3 264 39.0
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 4.8e-29 132.5 160 50.6
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.8e-28 130.6 295 35.9
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 2.4e-28 130.2 300 35.7
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 5.3e-28 129.0 285 36.5
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.1e-25 121.3 250 36.8
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.6e-24 117.5 269 36.4
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 1.8e-23 114.0 264 34.8
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.0e-23 113.2 147 49.0
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.1e-23 112.5 112 59.8
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 8.8e-23 111.7 264 35.6
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 7.4e-22 108.6 230 39.1
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 2.4e-20 103.6 122 54.9
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 4.1e-20 102.8 90 63.3
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 9.1e-20 101.7 171 38.6
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.3e-18 97.8 177 41.8
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.9e-17 94.0 167 40.1
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 1.9e-17 94.0 122 45.9
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.1e-14 84.7 123 43.1
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.4e-12 77.8 56 62.5
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 4.1e-12 76.3 144 36.8
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 6.1e-08 62.4 80 43.8
Lalb_Chr08g0232721 Lupinus albus HOM05D001047 ORTHO05D000768 1.4e-07 61.2 120 36.7
Ca_02220_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 1.8e-07 60.8 120 35.0
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 4.0e-07 59.7 123 35.8
Pp3c25_6330 Physcomitrium patens HOM05D002346 ORTHO05D002452 5.2e-07 59.3 122 36.1
Pp3c5_11730 Physcomitrium patens HOM05D002346 ORTHO05D002452 8.8e-07 58.5 119 36.1
Glyma.09G071600 Glycine max HOM05D001047 ORTHO05D000768 1.2e-06 58.2 183 32.8
Potri.012G044900 Populus trichocarpa HOM05D002346 ORTHO05D002452 1.5e-06 57.8 155 31.0
BcaB06g25850 Brassica carinata HOM05D002346 ORTHO05D002452 2.6e-06 57.0 133 30.8
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 5.7e-06 55.8 126 33.3
Ciclev10009025m.g Citrus clementina HOM05D001047 ORTHO05D000768 7.5e-06 55.5 135 32.6
A05p31930 Brassica napus HOM05D002346 ORTHO05D002452 9.7e-06 55.1 131 30.5


User provided reference genes

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