Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 2.8e-166 588.6 300 100.0
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 4.0e-141 505.0 300 84.7
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 4.3e-135 485.0 300 81.3
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 3.8e-131 471.9 335 73.1
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 6.7e-112 407.9 299 67.2
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 4.3e-111 405.2 300 67.3
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.1e-110 402.9 300 67.0
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 2.8e-110 402.5 298 66.4
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 3.1e-109 399.1 298 66.1
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 2.0e-108 396.4 298 65.8
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 1.3e-107 393.7 298 65.8
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 6.5e-107 391.3 294 64.6
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.4e-106 390.2 296 63.9
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.4e-106 390.2 298 64.8
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.6e-105 386.7 294 65.0
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 6.1e-105 384.8 298 63.4
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 1.0e-104 384.0 294 65.0
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.1e-103 380.6 298 62.8
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.1e-103 380.6 294 66.0
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.5e-103 380.2 298 62.8
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 3.3e-103 379.0 294 65.3
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 4.3e-103 378.6 295 63.4
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 4.3e-103 378.6 297 63.3
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.2e-102 376.3 294 64.3
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.7e-102 375.6 294 61.2
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 3.7e-102 375.6 295 61.7
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 8.2e-102 374.4 295 62.7
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.8e-101 373.2 294 61.9
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 2.4e-101 372.9 310 60.6
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.1e-101 372.5 313 60.1
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 2.0e-100 369.8 294 60.9
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 4.5e-100 368.6 294 60.9
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.0e-99 367.5 293 62.1
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.3e-99 367.1 294 60.2
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 5.0e-99 365.2 296 62.5
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 6.5e-99 364.8 296 62.5
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 6.5e-99 364.8 294 60.5
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 1.9e-98 363.2 297 62.6
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.5e-98 362.8 296 62.2
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 3.2e-98 362.5 296 61.1
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 1.2e-97 360.5 296 60.1
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 2.7e-97 359.4 296 59.8
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.1e-97 358.2 325 57.2
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.8e-96 356.7 297 62.3
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 3.0e-96 355.9 295 59.0
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 8.8e-96 354.4 294 60.2
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 1.1e-95 354.0 297 59.3
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 1.1e-95 354.0 296 59.1
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 2.0e-95 353.2 297 60.6
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 4.3e-95 352.1 294 58.5
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 5.7e-95 351.7 294 57.8
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 8.2e-94 347.8 295 58.0
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 5.3e-93 345.1 296 56.8
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 6.9e-93 344.7 294 59.5
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 5.9e-92 341.7 296 56.4
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.0e-91 340.9 300 58.3
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.3e-91 340.5 297 58.6
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 2.9e-91 339.3 296 55.7
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 2.9e-91 339.3 296 55.7
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 3.8e-91 339.0 298 59.1
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-90 336.7 280 60.7
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 4.2e-90 335.5 313 53.7
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 5.5e-90 335.1 296 56.8
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 1.8e-88 330.1 298 56.7
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.9e-88 328.9 292 57.2
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 5.1e-88 328.6 300 55.7
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 6.7e-88 328.2 294 54.8
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 1.5e-87 327.0 272 61.4
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.5e-87 327.0 257 63.0
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.3e-86 323.9 295 54.2
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.0e-84 316.6 361 46.3
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.2e-83 313.2 272 56.2
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 2.9e-83 312.8 295 53.2
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 5.5e-82 308.5 268 56.7
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 5.5e-82 308.5 297 52.5
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.3e-80 303.1 300 53.3
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.5e-79 298.1 304 52.6
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 4.8e-78 295.4 242 60.3
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 4.8e-78 295.4 232 63.4
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.1e-77 292.7 269 53.5
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 3.8e-75 285.8 299 50.5
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 1.6e-73 280.4 284 51.8
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.0e-73 278.1 201 64.2
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 5.2e-72 275.4 224 60.7
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 4.4e-71 272.3 201 65.7
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 5.7e-71 271.9 201 64.2
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 6.3e-70 268.5 234 58.5
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 5.9e-68 261.9 245 55.1
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.3e-67 260.8 214 62.1
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.7e-67 260.4 294 44.6
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 3.2e-66 256.1 303 44.2
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.2e-65 254.2 176 68.8
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.3e-64 250.0 297 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 8.8e-64 248.1 298 44.3
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 8.8e-64 248.1 258 50.0
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 6.3e-62 241.9 289 46.4
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 7.7e-60 235.0 294 45.2
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.3e-56 223.4 207 54.6
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 6.4e-54 215.3 202 53.0
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-53 214.2 188 56.4
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 3.9e-51 206.1 175 58.3
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 1.8e-48 197.2 188 55.3
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.2e-47 194.5 173 57.8
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.4e-45 187.6 202 47.0
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.0e-43 181.4 259 37.8
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 4.1e-37 159.5 327 35.2
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 6.0e-36 155.6 138 56.5
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 4.3e-34 149.4 127 57.5
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 8.1e-33 145.2 92 75.0
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.3e-32 143.7 93 69.9
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 3.8e-30 136.3 93 73.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.2e-28 131.3 92 66.3
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 1.6e-28 131.0 92 68.5
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.5e-26 124.4 87 64.4
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.1e-25 120.6 77 70.1
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.8e-24 117.5 151 45.7
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 8.9e-24 115.2 171 38.6
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 5.8e-23 112.5 126 46.0
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 7.6e-23 112.1 78 61.5
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 6.4e-22 109.0 108 50.9
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 7.8e-20 102.1 64 68.8
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.3e-19 101.3 124 42.7
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 1.3e-17 94.7 97 48.5
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 2.8e-17 93.6 67 62.7
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 6.2e-17 92.4 162 32.1
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 1.4e-16 91.3 103 45.6
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 7.6e-15 85.5 52 73.1
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.6e-12 77.8 91 44.0
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 2.1e-12 77.4 54 63.0
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.3e-10 69.7 66 54.5
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 7.4e-10 68.9 58 56.9
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.3e-09 68.2 76 48.7


User provided reference genes

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