Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 9.3e-156 553.5 285 100.0
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 7.0e-135 484.2 281 89.0
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.9e-132 476.1 273 90.1
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.0e-125 453.8 283 80.9
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 8.0e-123 444.1 287 78.7
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.0e-122 443.7 286 79.4
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.3e-122 442.6 291 77.3
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.5e-121 439.9 292 77.1
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 2.0e-121 439.5 285 82.1
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 3.4e-121 438.7 240 92.9
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 3.7e-120 435.3 275 80.0
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.8e-119 433.0 269 81.8
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 5.4e-119 431.4 289 77.2
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 7.0e-119 431.0 287 77.4
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 9.1e-119 430.6 286 76.2
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.6e-118 429.9 274 80.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.7e-118 429.1 282 78.4
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 6.5e-117 424.5 277 79.8
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 6.5e-117 424.5 269 81.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.9e-116 422.9 285 76.1
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 4.2e-116 421.8 271 78.6
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 5.5e-116 421.4 282 78.0
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 7.2e-116 421.0 271 79.3
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 9.5e-116 420.6 260 81.5
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 3.6e-115 418.7 246 84.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.0e-114 417.2 279 77.4
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.0e-114 417.2 268 79.5
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.0e-114 417.2 285 76.1
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.0e-114 417.2 285 76.5
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 3.0e-114 415.6 280 76.4
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 4.0e-114 415.2 289 75.1
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.2e-114 414.8 265 80.0
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.2e-113 413.7 272 77.9
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.5e-113 413.3 270 77.8
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.4e-113 412.1 255 82.0
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 4.4e-113 411.8 272 77.9
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 7.5e-113 411.0 267 77.9
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.3e-112 410.2 247 82.6
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.3e-112 410.2 278 76.6
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.7e-112 409.8 276 79.0
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.8e-112 409.1 258 80.6
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 3.7e-112 408.7 271 76.8
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 4.9e-112 408.3 271 77.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 4.9e-112 408.3 275 76.7
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 8.3e-112 407.5 260 80.4
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 2.4e-111 406.0 272 75.4
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.4e-111 406.0 272 76.5
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 3.1e-111 405.6 276 77.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 4.1e-111 405.2 304 69.4
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 7.0e-111 404.4 272 75.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 9.2e-111 404.1 266 77.4
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 9.2e-111 404.1 250 83.6
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 9.2e-111 404.1 284 73.6
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.2e-110 403.7 303 69.3
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 2.7e-110 402.5 266 77.4
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 3.5e-110 402.1 284 73.2
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 5.9e-110 401.4 266 77.4
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 7.8e-110 401.0 291 73.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.0e-109 400.6 286 73.1
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.3e-109 400.2 273 75.1
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 2.9e-109 399.1 289 75.1
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.5e-108 396.7 288 72.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.9e-108 396.4 269 76.6
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 2.5e-108 396.0 260 79.2
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.3e-108 395.6 310 68.4
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 4.7e-107 391.7 271 74.5
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 8.0e-107 391.0 289 72.3
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 3.0e-106 389.0 280 72.1
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.2e-105 387.1 274 72.6
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 2.0e-105 386.3 289 70.9
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.3e-104 383.6 279 69.9
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 1.7e-104 383.3 290 71.0
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 3.7e-104 382.1 267 73.8
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 8.3e-104 380.9 279 72.0
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.4e-103 380.2 299 66.6
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.7e-102 375.9 261 73.6
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.0e-101 372.5 223 82.5
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.9e-100 369.8 250 77.2
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 7.3e-100 367.9 258 73.6
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.1e-98 364.0 281 69.4
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.8e-98 363.2 288 68.8
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 8.9e-98 360.9 293 67.6
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 4.4e-97 358.6 223 81.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 7.5e-97 357.8 259 71.0
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.9e-96 355.1 304 64.8
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 4.9e-96 355.1 241 75.5
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 7.0e-95 351.3 272 68.8
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.2e-94 350.5 244 73.4
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.1e-94 349.7 238 75.6
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.7e-93 346.7 292 65.8
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 2.6e-89 332.8 280 64.3
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.4e-87 326.2 223 73.5
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.2e-87 325.9 223 76.2
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.1e-86 323.2 198 83.3
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.7e-86 322.8 361 54.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 2.5e-84 316.2 196 80.1
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 7.3e-84 314.7 273 63.7
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.8e-82 310.1 281 61.2
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.7e-80 303.5 197 76.1
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 2.4e-79 299.7 345 52.2
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 9.2e-79 297.7 172 84.9
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 2.3e-77 293.1 196 76.0
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 6.6e-77 291.6 208 74.5
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 6.6e-77 291.6 233 66.5
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.6e-73 278.1 176 80.7
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.4e-71 273.9 266 55.6
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 4.6e-62 242.3 225 59.6
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 9.6e-60 234.6 343 45.2
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 6.2e-59 231.9 243 49.8
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 3.1e-58 229.6 239 49.8
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.5e-57 227.3 199 62.3
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 4.9e-56 222.2 234 49.1
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.2e-48 196.8 167 58.7
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 4.3e-44 182.6 251 47.0
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.2e-43 180.3 135 69.6
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 8.8e-37 158.3 123 73.2
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.8e-35 152.5 91 81.3
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 6.9e-34 148.7 123 69.1
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 5.9e-33 145.6 96 79.2
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 3.6e-30 136.3 123 64.2
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 5.7e-28 129.0 135 53.3
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.4e-23 114.4 284 33.8
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 4.2e-23 112.8 73 82.2
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.2e-23 112.1 170 41.2
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.7e-22 110.2 78 69.2
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 8.0e-22 108.6 92 54.3
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 3.7e-19 99.8 79 67.1
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 8.2e-19 98.6 57 80.7
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 7.0e-18 95.5 59 79.7
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 2.0e-17 94.0 51 84.3
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 3.5e-17 93.2 88 62.5
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 3.5e-17 93.2 200 39.5
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 3.5e-17 93.2 200 39.0
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 2.2e-16 90.5 55 76.4
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 2.2e-16 90.5 55 76.4
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 7.2e-15 85.5 102 51.0
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 1.6e-14 84.3 232 30.6
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.0e-13 81.6 50 78.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 1.8e-13 80.9 110 44.5
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 1.5e-12 77.8 89 51.7
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 4.4e-12 76.3 56 69.6
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.4e-12 76.3 59 57.6
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.3e-11 74.7 93 49.5
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.1e-07 61.6 58 56.9
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 7.2e-07 58.9 195 24.1


User provided reference genes

Program Settings