Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 4.2e-131 471.5 254 100.0
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.0e-101 372.9 260 79.6
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.6e-101 372.5 260 80.0
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 2.6e-101 372.5 257 80.9
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.7e-92 343.2 258 76.0
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 7.0e-86 321.2 258 68.2
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 2.2e-84 316.2 257 69.3
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.5e-83 313.5 257 68.1
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 7.2e-83 311.2 258 67.1
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 1.2e-82 310.5 251 68.5
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 2.1e-82 309.7 258 67.8
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 4.4e-80 302.0 257 65.8
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 7.5e-80 301.2 250 67.2
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.8e-79 299.3 248 68.1
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 2.8e-79 299.3 260 64.2
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.8e-78 296.6 260 65.4
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.3e-78 295.0 260 64.2
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 7.0e-78 294.7 260 65.0
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.5e-77 292.4 260 64.6
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 6.5e-76 288.1 254 65.0
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.5e-76 288.1 257 63.8
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.1e-75 287.3 250 66.4
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 4.2e-75 285.4 252 64.3
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 4.2e-75 285.4 248 64.9
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.6e-74 283.5 257 64.6
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.6e-74 282.3 283 58.0
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 3.6e-74 282.3 254 62.6
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 3.6e-74 282.3 259 64.9
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 6.1e-74 281.6 256 64.1
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.2e-73 278.5 250 63.2
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 5.2e-73 278.5 249 65.1
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.2e-72 277.3 244 64.8
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.5e-72 276.9 251 64.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.0e-72 276.6 250 62.8
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 3.4e-72 275.8 249 65.5
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.4e-72 275.4 259 63.7
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 5.7e-72 275.0 252 61.9
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 2.2e-71 273.1 250 62.8
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 2.8e-71 272.7 250 65.2
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.8e-71 271.9 250 62.0
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 4.8e-71 271.9 247 63.2
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 4.8e-71 271.9 250 62.4
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 8.3e-71 271.2 249 61.8
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 5.4e-70 268.5 261 62.1
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 5.4e-70 268.5 246 62.2
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 9.1e-70 267.7 251 63.7
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 1.6e-69 266.9 245 62.0
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.6e-69 266.9 249 62.2
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 2.7e-69 266.2 258 64.3
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 5.9e-69 265.0 247 62.8
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.0e-68 264.2 259 60.6
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.7e-68 263.5 259 62.9
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 3.8e-68 262.3 258 60.5
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 3.8e-68 262.3 258 62.0
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 8.5e-68 261.2 254 61.4
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.9e-67 260.0 259 59.5
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 2.5e-67 259.6 275 57.1
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.5e-67 259.6 255 60.8
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 4.2e-67 258.8 249 60.2
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 5.5e-67 258.5 255 60.4
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 7.2e-67 258.1 254 61.0
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 9.4e-67 257.7 252 59.5
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.6e-66 256.9 249 62.7
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 2.7e-66 256.1 253 60.1
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 2.7e-66 256.1 252 61.9
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 2.7e-66 256.1 245 62.0
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 2.7e-66 256.1 252 59.1
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 3.6e-66 255.8 259 59.5
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 6.1e-66 255.0 253 58.5
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 6.1e-66 255.0 246 62.2
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 8.0e-66 254.6 253 59.7
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.0e-65 254.2 262 56.9
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.0e-65 254.2 252 60.7
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 4.0e-65 252.3 247 58.7
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 4.0e-65 252.3 245 61.2
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 5.2e-65 251.9 248 60.5
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 5.2e-65 251.9 255 60.0
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 8.8e-65 251.1 255 59.6
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.5e-64 250.4 248 58.9
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 2.8e-63 246.1 255 57.6
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 2.8e-63 246.1 248 62.9
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.8e-63 246.1 258 58.1
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 3.7e-63 245.7 260 58.5
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 4.9e-63 245.4 250 58.0
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 6.3e-63 245.0 296 53.0
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 4.1e-62 242.3 264 57.2
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 4.1e-62 242.3 248 59.3
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 3.5e-61 239.2 254 58.3
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 7.7e-61 238.0 256 58.2
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 1.3e-60 237.3 250 57.2
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 2.9e-60 236.1 252 56.7
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 3.8e-60 235.7 253 57.7
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.1e-59 234.2 255 58.4
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.9e-59 233.4 257 57.2
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 2.5e-59 233.0 255 56.1
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 9.5e-59 231.1 230 61.3
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 1.2e-58 230.7 228 60.1
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.6e-58 229.2 302 49.3
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 8.0e-58 228.0 253 56.1
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.4e-57 227.3 253 57.3
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 3.0e-57 226.1 157 77.1
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 4.0e-57 225.7 255 56.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.5e-56 223.8 252 54.0
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 2.0e-56 223.4 154 79.9
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.6e-56 223.0 262 55.3
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 4.4e-56 222.2 249 53.8
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.7e-56 221.9 162 74.1
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 5.7e-56 221.9 252 53.6
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.7e-55 220.3 375 43.2
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 3.7e-55 219.2 248 55.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 3.9e-52 209.1 181 68.5
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.5e-51 207.2 269 49.4
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 3.3e-51 206.1 224 56.7
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.0e-48 196.8 216 58.3
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 6.4e-47 191.8 254 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 4.3e-43 179.1 283 44.9
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.1e-41 174.5 254 45.7
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.2e-40 171.0 197 57.4
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 2.0e-40 170.2 220 49.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.0e-40 170.2 254 46.9
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.7e-39 166.0 182 56.6
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 2.4e-38 163.3 279 42.3
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.7e-36 157.1 270 43.3
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.4e-33 147.5 175 53.7
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 8.9e-33 144.8 97 78.4
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.0e-32 143.7 176 51.7
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.6e-32 143.3 99 76.8
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.9e-31 139.8 127 62.2
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 3.8e-31 139.4 205 50.2
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.8e-25 120.6 185 49.2
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 5.1e-20 102.4 123 47.2
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 1.6e-18 97.4 105 54.3
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 2.4e-17 93.6 87 54.0
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 5.3e-17 92.4 87 54.0
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 6.9e-17 92.0 65 78.5
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 7.6e-16 88.6 89 52.8
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 2.2e-15 87.0 151 43.0
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.9e-14 84.0 55 74.5
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.6e-13 80.9 227 35.2
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 5.1e-12 75.9 154 38.3
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 6.7e-12 75.5 55 74.5
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.9e-11 73.9 64 64.1
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.9e-09 65.5 40 72.5
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.2e-08 64.7 171 33.9


User provided reference genes

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