Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.5e-96 356.3 190 100.0
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 3.7e-84 315.1 188 89.9
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.2e-83 312.0 188 89.4
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 7.8e-74 280.8 191 79.1
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.1e-72 276.9 185 78.9
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.1e-72 276.9 191 79.6
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.5e-72 276.6 191 76.4
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.9e-72 276.2 190 78.9
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.9e-72 276.2 187 79.1
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 3.3e-72 275.4 188 77.7
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 3.3e-72 275.4 191 78.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.3e-72 275.0 187 79.1
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 4.3e-72 275.0 191 79.1
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 4.7e-71 271.6 191 77.0
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 4.7e-71 271.6 191 75.9
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 6.2e-71 271.2 191 74.9
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.1e-70 270.4 188 76.1
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.3e-70 269.2 178 80.3
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 4.0e-70 268.5 191 74.9
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 5.2e-70 268.1 191 76.4
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 6.8e-70 267.7 191 74.3
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.2e-69 266.9 189 75.1
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.5e-69 266.5 179 78.8
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 2.6e-69 265.8 191 73.8
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 3.4e-69 265.4 188 74.5
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 3.4e-69 265.4 191 73.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 4.4e-69 265.0 195 74.9
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.8e-69 264.6 191 73.3
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 7.6e-69 264.2 191 75.9
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 7.6e-69 264.2 188 74.5
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.7e-68 263.1 192 74.0
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.2e-68 262.7 191 74.3
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 2.2e-68 262.7 171 80.1
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.2e-68 262.7 191 75.4
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 3.7e-68 261.9 191 75.4
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 6.4e-68 261.2 190 73.7
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 4.1e-67 258.5 191 73.3
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 7.1e-67 257.7 188 74.5
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 9.2e-67 257.3 188 73.9
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.6e-66 256.5 171 77.8
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 2.1e-66 256.1 155 83.9
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.6e-66 255.0 200 69.5
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 6.0e-66 254.6 200 69.5
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 6.0e-66 254.6 200 69.5
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.3e-65 253.4 194 73.7
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.7e-65 253.1 192 71.4
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.7e-65 253.1 192 71.4
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.3e-65 252.7 195 70.8
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.0e-65 252.3 189 71.4
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 3.0e-65 252.3 190 71.6
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.9e-65 251.9 192 72.9
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.9e-65 251.9 192 71.4
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 6.6e-65 251.1 192 71.4
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.1e-64 250.4 184 71.7
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 2.5e-64 249.2 192 70.8
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.5e-64 249.2 196 70.4
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 3.3e-64 248.8 193 68.9
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.3e-64 248.4 199 69.8
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 5.6e-64 248.1 188 71.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 9.6e-64 247.3 188 71.8
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.2e-63 246.9 198 68.7
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.2e-63 246.9 191 71.7
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.2e-63 246.9 163 74.8
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.6e-63 246.5 191 72.3
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.6e-63 246.5 164 75.6
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.6e-63 246.5 175 78.3
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.6e-63 246.5 189 69.8
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.1e-63 246.1 191 70.7
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 2.1e-63 246.1 156 78.8
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 2.8e-63 245.7 163 74.8
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 3.6e-63 245.4 191 71.2
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 3.6e-63 245.4 173 74.6
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 4.7e-63 245.0 191 71.7
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 4.7e-63 245.0 192 68.2
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 4.7e-63 245.0 191 68.6
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 4.7e-63 245.0 191 68.6
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 6.2e-63 244.6 209 65.1
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 8.1e-63 244.2 188 71.3
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 8.1e-63 244.2 192 69.3
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.4e-62 243.4 194 67.5
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.4e-62 242.7 190 69.5
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.4e-62 242.7 199 68.8
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.1e-62 242.3 188 68.6
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 3.1e-62 242.3 185 70.8
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 6.8e-62 241.1 189 69.3
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 8.9e-62 240.7 187 68.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 1.2e-61 240.4 192 66.7
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.5e-61 240.0 184 67.9
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.0e-61 239.6 192 69.8
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 2.6e-61 239.2 187 68.4
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 4.4e-61 238.4 188 66.5
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 5.8e-61 238.0 200 66.0
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 7.6e-61 237.7 188 68.1
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 7.6e-61 237.7 181 70.2
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 7.6e-61 237.7 169 74.0
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 9.9e-61 237.3 188 68.1
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 9.9e-61 237.3 184 67.4
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.3e-60 236.9 167 73.7
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.7e-60 236.5 205 63.9
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.9e-60 235.7 188 66.0
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 6.4e-60 234.6 163 71.2
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.4e-59 233.4 159 73.0
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.9e-59 233.0 189 67.2
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 2.4e-59 232.6 151 78.1
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 4.2e-59 231.9 231 62.8
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 4.2e-59 231.9 182 68.1
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.6e-58 229.9 170 69.4
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.1e-58 229.6 159 73.0
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.5e-58 228.8 188 66.0
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.5e-58 228.8 201 62.2
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.3e-57 226.1 156 73.7
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 3.9e-57 225.3 184 67.4
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.1e-56 223.8 166 72.9
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 3.3e-56 222.2 199 61.8
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 4.3e-56 221.9 190 64.2
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 4.3e-56 221.9 193 65.3
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 5.6e-56 221.5 162 71.6
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.6e-55 219.9 197 62.4
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.1e-54 217.2 169 71.6
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.8e-54 216.5 163 66.3
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 9.0e-54 214.2 169 69.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.5e-53 213.4 190 63.7
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 9.9e-53 210.7 184 64.1
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.7e-52 209.9 255 52.5
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.8e-52 208.8 193 62.7
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 2.7e-50 202.6 183 62.8
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 3.3e-48 195.7 192 60.4
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 9.6e-48 194.1 192 59.9
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 6.2e-47 191.4 172 61.6
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 8.1e-47 191.0 146 67.8
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 4.0e-46 188.7 149 64.4
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 6.4e-44 181.4 148 67.6
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 8.4e-44 181.0 135 72.6
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 3.3e-40 169.1 131 65.6
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 7.4e-40 167.9 109 74.3
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 2.4e-38 162.9 163 59.5
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.4e-38 162.9 104 76.0
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.0e-38 162.2 177 55.4
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.6e-37 159.5 131 64.1
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.8e-37 158.3 131 64.1
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.0e-36 157.5 144 51.4
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.3e-36 157.1 183 50.3
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.8e-36 155.6 131 62.6
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 6.5e-36 154.8 156 50.6
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.5e-35 151.8 131 63.4
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.6e-34 150.2 130 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 7.4e-32 141.4 144 48.6
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 1.3e-31 140.6 82 81.7
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.6e-31 140.2 140 48.6
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.1e-31 139.8 106 66.0
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 3.7e-31 139.0 131 60.3
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 6.3e-31 138.3 156 48.1
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.3e-28 130.6 123 54.5
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 9.0e-22 107.8 183 40.4
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.4e-21 105.9 119 54.6
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.5e-19 99.8 87 63.2
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 3.4e-13 79.3 58 65.5
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 6.1e-10 68.6 80 60.0
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 1.8e-09 67.0 172 38.4
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 7.4e-08 61.6 103 44.7
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 7.0e-06 55.1 43 60.5


User provided reference genes

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