Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.1e-119 433.3 226 100.0
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 9.0e-69 264.2 209 68.4
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 5.8e-68 261.5 209 68.4
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 3.5e-65 252.3 196 71.9
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 7.4e-47 191.4 196 58.2
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.4e-45 187.2 178 60.7
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 1.4e-45 187.2 192 58.3
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 1.8e-45 186.8 202 56.4
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 3.1e-45 186.0 190 57.4
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 3.1e-45 186.0 178 61.2
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 4.1e-45 185.7 211 54.5
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 9.0e-45 184.5 201 54.2
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.6e-44 183.0 202 55.0
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 4.5e-44 182.2 214 52.8
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 5.9e-44 181.8 193 56.0
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.9e-44 181.8 216 51.9
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 7.7e-44 181.4 215 53.5
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 7.7e-44 181.4 202 55.0
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.3e-43 180.6 177 59.9
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.7e-43 180.3 202 54.5
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.9e-43 179.5 208 53.8
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 3.8e-43 179.1 206 52.9
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.0e-43 178.7 214 52.3
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 6.5e-43 178.3 183 56.3
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.1e-42 177.6 184 55.4
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.4e-42 177.2 201 52.2
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.9e-42 176.8 214 51.9
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 4.2e-42 175.6 204 52.5
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 5.5e-42 175.3 190 54.7
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 5.5e-42 175.3 209 51.7
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 9.4e-42 174.5 181 54.1
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 1.2e-41 174.1 188 54.8
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 1.2e-41 174.1 191 53.4
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.6e-41 173.7 183 55.7
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 2.1e-41 173.3 188 55.9
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.7e-41 172.9 179 54.7
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.6e-41 172.6 199 52.8
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 6.1e-41 171.8 183 55.2
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.8e-40 170.2 200 52.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 3.9e-40 169.1 212 51.4
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 6.7e-40 168.3 197 52.3
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 6.7e-40 168.3 197 52.3
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.1e-39 167.5 175 53.1
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.1e-39 167.5 179 52.5
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 1.5e-39 167.2 185 53.0
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 2.0e-39 166.8 199 51.3
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 2.5e-39 166.4 196 52.0
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.5e-39 166.4 194 51.5
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 3.3e-39 166.0 202 51.5
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 3.3e-39 166.0 193 51.8
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 5.7e-39 165.2 181 55.8
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.3e-38 164.1 179 52.5
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.7e-38 163.7 201 51.2
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.8e-37 160.2 193 50.3
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 2.4e-37 159.8 170 55.9
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.1e-37 159.5 193 48.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 5.3e-37 158.7 208 48.1
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 6.9e-37 158.3 179 52.5
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 6.9e-37 158.3 261 44.4
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 9.1e-37 157.9 181 54.7
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.2e-36 157.5 195 47.2
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 2.0e-36 156.8 198 49.0
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 2.6e-36 156.4 191 51.3
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.6e-36 156.4 205 50.2
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.6e-36 156.4 181 49.7
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 4.5e-36 155.6 175 51.4
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 4.5e-36 155.6 191 51.3
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 4.5e-36 155.6 178 52.8
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 7.7e-36 154.8 200 49.0
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.7e-36 154.8 211 46.0
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 1.7e-35 153.7 168 51.2
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 2.9e-35 152.9 180 50.0
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 5.0e-35 152.1 183 53.0
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 8.5e-35 151.4 175 51.4
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 8.5e-35 151.4 209 45.5
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.1e-34 151.0 178 51.7
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 3.2e-34 149.4 175 49.7
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 3.2e-34 149.4 175 49.7
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 4.2e-34 149.1 161 52.8
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.2e-34 148.3 187 51.9
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 9.4e-34 147.9 200 48.0
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 9.4e-34 147.9 180 50.0
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 2.1e-33 146.7 181 51.4
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 2.7e-33 146.4 177 49.2
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.6e-33 146.0 181 49.7
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 4.7e-33 145.6 203 48.8
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 4.7e-33 145.6 175 46.3
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 7.9e-33 144.8 177 49.7
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 7.9e-33 144.8 181 48.6
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.0e-32 144.4 181 51.4
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 8.8e-32 141.4 182 47.3
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 8.8e-32 141.4 178 50.0
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.1e-31 141.0 197 44.2
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.5e-31 140.6 182 47.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.0e-31 140.2 183 49.7
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.3e-30 137.5 181 50.3
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.1e-29 132.9 199 45.2
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 2.6e-28 129.8 170 43.5
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 8.5e-27 124.8 183 44.3
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 1.8e-24 117.1 170 43.5
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 4.0e-24 115.9 127 57.5
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 4.0e-24 115.9 159 42.1
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 5.7e-23 112.1 134 50.0
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 9.7e-23 111.3 177 42.4
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 8.2e-22 108.2 83 63.9
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 2.0e-20 103.6 181 38.1
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 7.7e-20 101.7 198 38.4
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.3e-19 100.9 166 38.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 5.0e-19 99.0 189 38.6
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 1.6e-17 94.0 164 39.6
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.4e-15 85.9 130 46.9
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 4.4e-15 85.9 128 45.3
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 7.5e-15 85.1 82 57.3
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 3.7e-14 82.8 82 59.8
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 4.8e-14 82.4 165 35.8
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 4.1e-13 79.3 88 46.6
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 5.4e-13 79.0 139 42.4
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.6e-12 77.4 117 41.9
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.0e-11 72.4 129 45.7
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 5.0e-11 72.4 78 53.8
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.5e-10 70.1 101 48.5
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 3.2e-10 69.7 65 47.7
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 6.1e-09 65.5 81 53.1
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 6.1e-09 65.5 81 53.1
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 2.0e-07 60.5 133 34.6
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.0e-07 60.5 44 65.9


User provided reference genes

Program Settings