Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.2e-177 626.3 309 100.0
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 5.5e-101 371.7 270 70.7
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 2.7e-100 369.4 270 72.6
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 3.9e-99 365.5 276 69.2
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 6.7e-99 364.8 271 69.4
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 3.0e-59 233.0 280 48.6
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 2.4e-56 223.4 280 46.4
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.4e-56 223.4 280 46.4
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 2.4e-56 223.4 244 48.8
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.4e-56 222.2 282 46.5
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 1.5e-53 214.2 235 49.4
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 7.2e-53 211.8 253 46.2
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 8.0e-52 208.4 245 47.8
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.8e-51 207.2 238 45.8
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 1.8e-51 207.2 235 46.8
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.4e-50 203.0 227 45.4
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 4.9e-49 199.1 246 45.1
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 6.3e-49 198.7 251 45.0
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 2.4e-48 196.8 247 43.7
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 3.1e-48 196.4 253 41.5
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 1.2e-47 194.5 278 40.3
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 2.0e-47 193.7 271 39.1
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 4.5e-47 192.6 252 42.9
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 5.9e-47 192.2 273 39.9
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 5.9e-47 192.2 281 39.9
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 2.9e-46 189.9 271 38.4
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 2.9e-46 189.9 248 46.8
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 6.6e-46 188.7 254 40.9
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 6.6e-46 188.7 248 44.0
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 1.5e-45 187.6 291 41.2
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 1.5e-45 187.6 247 42.9
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 1.2e-44 184.5 247 40.1
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 1.2e-44 184.5 246 48.0
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 3.6e-44 183.0 272 40.4
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 4.7e-44 182.6 245 42.4
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 4.7e-44 182.6 240 46.7
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 4.7e-44 182.6 250 40.0
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 6.1e-44 182.2 265 41.9
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 6.1e-44 182.2 251 41.0
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 4.0e-43 179.5 255 40.0
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 8.9e-43 178.3 288 41.0
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 1.2e-42 177.9 287 41.1
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 3.4e-42 176.4 254 39.0
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 8.3e-41 171.8 280 36.4
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.4e-40 170.2 282 37.2
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 9.2e-40 168.3 197 50.3
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.2e-39 167.9 162 53.7
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 1.6e-39 167.5 250 41.2
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 1.3e-38 164.5 253 42.7
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 8.6e-38 161.8 276 39.5
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 5.6e-37 159.1 256 38.7
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 5.6e-37 159.1 179 45.8
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 2.1e-36 157.1 255 39.6
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 1.0e-35 154.8 257 34.6
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 3.1e-35 153.3 270 38.9
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 5.2e-35 152.5 271 38.7
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 5.2e-35 152.5 271 38.7
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 8.9e-35 151.8 255 38.8
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.5e-34 151.0 244 39.8
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 1.5e-34 151.0 252 36.9
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.6e-34 150.2 215 43.7
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 3.4e-34 149.8 256 38.3
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 4.4e-34 149.4 196 43.4
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 4.4e-34 149.4 168 50.0
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 4.4e-34 149.4 215 43.7
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 2.2e-33 147.1 246 37.8
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 1.4e-32 144.4 255 37.6
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.9e-32 144.1 249 36.9
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 5.4e-32 142.5 241 38.6
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.7e-31 140.2 277 31.8
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 6.0e-31 139.0 198 39.9
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 6.0e-31 139.0 194 38.7
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 7.8e-31 138.7 256 34.0
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 7.8e-31 138.7 245 33.9
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 7.8e-31 138.7 265 34.7
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 1.3e-30 137.9 245 34.7
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 3.6e-28 129.8 204 40.2
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 1.1e-27 128.3 173 45.1
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.4e-27 127.9 246 35.0
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 4.0e-27 126.3 243 34.6
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 3.4e-26 123.2 282 32.6
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.7e-25 120.9 259 31.3
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 8.3e-25 118.6 225 32.4
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 5.4e-24 115.9 243 30.9
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 2.7e-23 113.6 164 41.5
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 9.5e-21 105.1 161 41.0
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.2e-20 104.8 122 44.3
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 5.8e-18 95.9 173 36.4
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 2.3e-14 84.0 133 41.4
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 1.6e-12 77.8 116 36.2
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.8e-12 77.0 275 28.0
CsaV3_7G008230 Cucumis sativus L. HOM05D001524 ORTHO05D001392 1.5e-10 71.2 211 23.2
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 1.3e-09 68.2 90 43.3
Potri.001G299400 Populus trichocarpa HOM05D001524 ORTHO05D001392 6.4e-09 65.9 212 25.5
Sed0022824 Sechium edule HOM05D001524 ORTHO05D001392 6.4e-09 65.9 220 26.4
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 7.1e-08 62.4 245 22.4
CsaV3_7G008220 Cucumis sativus L. HOM05D001524 ORTHO05D001392 9.3e-08 62.0 209 27.3
CsaV3_7G008240 Cucumis sativus L. HOM05D001524 ORTHO05D001392 9.3e-08 62.0 211 24.2
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 1.2e-07 61.6 229 24.0
SMO144G0004 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 1.2e-07 61.6 234 26.9
SMO144G0101 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 1.2e-07 61.6 234 26.1
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 1.6e-07 61.2 218 22.5
Lj1g0018373 Lotus japonicus HOM05D001524 ORTHO05D001392 2.7e-07 60.5 223 25.1
VMungo0720G2083 Vigna mungo HOM05D001524 ORTHO05D001392 2.7e-07 60.5 212 26.9
Cfa004595 Carpinus fangiana HOM05D001524 ORTHO05D001392 3.5e-07 60.1 213 23.0
Potri.009G094600 Populus trichocarpa HOM05D001524 ORTHO05D001392 3.5e-07 60.1 210 23.3
SEGI_17993 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 3.5e-07 60.1 231 19.9
Atru.chr5.2479 Acer truncatum HOM05D001524 ORTHO05D001392 4.6e-07 59.7 218 22.5
Lj9C324T3 Lonicera japonica HOM05D001524 ORTHO05D001392 4.6e-07 59.7 233 21.0
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 6.0e-07 59.3 227 24.7
MELO3C018483.2 Cucumis melo HOM05D001524 ORTHO05D001392 6.0e-07 59.3 240 25.0
RcHm_v2.0_Chr6g0254831 Rosa chinensis HOM05D001524 ORTHO05D001392 6.0e-07 59.3 233 24.9
ClCG02G006440 Citrullus lanatus HOM05D001524 ORTHO05D001392 7.8e-07 58.9 189 27.5
Prupe.8G136100 Prunus persica HOM05D001524 ORTHO05D001392 1.3e-06 58.2 213 24.9
MD05G1090800 Malus domestica HOM05D001524 ORTHO05D001392 1.7e-06 57.8 209 22.5
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.7e-06 57.8 217 23.0
Eucgr.G01335 Eucalyptus grandis HOM05D001524 ORTHO05D001392 2.3e-06 57.4 234 23.1
Glyma.10G261200 Glycine max HOM05D001524 ORTHO05D001392 2.3e-06 57.4 209 22.0
Lj9C324T0 Lonicera japonica HOM05D001524 ORTHO05D001392 2.3e-06 57.4 211 21.3
SEGI_16365 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 3.0e-06 57.0 130 27.7
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 3.9e-06 56.6 246 23.2
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 5.1e-06 56.2 229 21.0
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 5.1e-06 56.2 218 22.0
Nitab4.5_0011634g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 5.1e-06 56.2 239 22.2
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 6.6e-06 55.8 209 22.0
Peaxi162Scf00016g02429 Petunia axillaris HOM05D001524 ORTHO05D001392 8.7e-06 55.5 246 21.1


User provided reference genes

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