Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 4.1e-101 371.3 176 100.0
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 1.8e-61 239.6 230 57.0
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 2.4e-61 239.2 230 57.0
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.6e-60 236.5 230 56.1
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.0e-56 223.8 230 53.5
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 2.3e-56 222.6 232 52.6
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 5.2e-56 221.5 230 53.5
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 5.2e-56 221.5 230 52.6
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 8.9e-56 220.7 230 51.7
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 8.9e-56 220.7 240 52.1
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.5e-55 219.9 240 51.7
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.5e-55 219.9 240 51.7
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.6e-55 219.2 229 51.1
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 3.4e-55 218.8 230 52.2
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 5.7e-55 218.0 229 52.4
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 5.7e-55 218.0 240 50.0
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 7.5e-55 217.6 230 52.6
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.3e-54 216.9 230 50.9
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.7e-54 216.5 240 51.2
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.2e-54 216.1 240 51.2
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 2.2e-54 216.1 240 50.8
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 4.9e-54 214.9 240 50.4
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 6.4e-54 214.5 230 52.2
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 8.3e-54 214.2 230 49.6
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 8.3e-54 214.2 229 49.8
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 8.3e-54 214.2 230 51.3
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 8.3e-54 214.2 228 50.4
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 8.3e-54 214.2 230 51.3
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.1e-53 213.8 230 50.4
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.4e-53 213.4 229 50.2
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.8e-53 213.0 230 51.7
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.8e-53 213.0 230 50.9
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.8e-53 213.0 230 50.0
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 2.4e-53 212.6 230 50.4
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 4.1e-53 211.8 230 50.0
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 5.4e-53 211.5 230 51.3
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 9.2e-53 210.7 230 51.7
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 1.2e-52 210.3 229 51.1
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 2.0e-52 209.5 230 50.4
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 2.7e-52 209.1 253 47.0
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 2.7e-52 209.1 230 50.0
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.7e-52 209.1 230 50.0
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 2.7e-52 209.1 230 50.0
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 4.6e-52 208.4 240 48.3
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 4.6e-52 208.4 237 47.7
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.3e-51 206.8 230 49.6
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.7e-51 206.5 230 49.1
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.7e-51 206.5 230 49.6
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 2.3e-51 206.1 232 50.0
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.3e-51 206.1 230 48.7
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 2.3e-51 206.1 230 49.1
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 2.3e-51 206.1 230 48.7
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 2.3e-51 206.1 230 48.7
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.3e-51 206.1 230 48.7
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 3.0e-51 205.7 230 49.1
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.0e-51 204.9 230 50.0
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 5.0e-51 204.9 230 48.7
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 6.6e-51 204.5 240 48.8
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 8.6e-51 204.1 230 47.8
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 8.6e-51 204.1 230 50.4
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.5e-50 203.4 229 48.5
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.5e-50 203.4 230 48.7
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.5e-50 203.4 232 49.1
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.5e-50 203.4 230 50.4
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-50 203.0 230 49.6
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.9e-50 203.0 230 50.0
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.9e-50 203.0 230 49.1
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 2.5e-50 202.6 230 48.7
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.6e-50 201.4 230 50.0
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 7.3e-50 201.1 231 48.5
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 9.5e-50 200.7 230 49.6
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.6e-49 199.9 230 48.3
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.1e-49 199.5 217 52.1
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 2.8e-49 199.1 231 48.1
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.8e-49 199.1 230 49.6
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 2.8e-49 199.1 230 48.7
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.8e-49 199.1 228 46.5
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 3.6e-49 198.7 230 47.8
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 3.6e-49 198.7 230 47.0
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 3.6e-49 198.7 230 48.7
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 4.7e-49 198.4 230 48.7
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 6.2e-49 198.0 240 47.1
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 6.2e-49 198.0 230 48.7
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 8.0e-49 197.6 229 49.3
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 8.0e-49 197.6 228 47.4
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.8e-48 196.4 230 47.0
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 4.0e-48 195.3 238 46.6
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 5.2e-48 194.9 229 45.9
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 6.8e-48 194.5 230 48.7
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.2e-47 193.7 230 46.1
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.5e-47 193.4 191 54.5
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.5e-47 193.4 228 47.4
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.6e-47 192.6 228 47.4
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 2.6e-47 192.6 161 62.1
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 7.5e-47 191.0 230 45.2
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 7.5e-47 191.0 230 47.0
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 3.7e-46 188.7 230 47.0
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 8.3e-46 187.6 228 46.5
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 8.3e-46 187.6 230 46.1
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.4e-45 186.8 187 52.4
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.4e-45 186.0 228 46.1
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.2e-45 185.7 230 45.7
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 4.1e-45 185.3 230 46.1
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 4.1e-45 185.3 230 46.5
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 1.2e-44 183.7 229 45.4
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.7e-44 182.6 230 44.8
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.3e-43 180.3 226 45.1
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.3e-42 175.6 217 47.9
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 4.3e-42 175.3 232 44.4
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 4.3e-42 175.3 228 45.6
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 1.6e-41 173.3 232 44.4
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.7e-41 171.8 219 47.9
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.7e-41 171.8 189 49.2
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.3e-40 169.5 232 44.0
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 4.0e-40 168.7 271 37.6
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 7.1e-37 157.9 288 36.1
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 8.6e-35 151.0 192 46.9
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 2.5e-34 149.4 221 41.6
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 7.3e-34 147.9 202 44.6
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.1e-33 146.4 227 39.2
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.8e-33 146.0 226 38.9
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.3e-30 137.1 178 45.5
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.4e-29 133.7 225 33.8
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 3.9e-27 125.6 224 37.5
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.1e-26 124.0 214 39.7
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 7.3e-26 121.3 152 48.0
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 6.2e-25 118.2 149 47.0
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.8e-24 116.7 223 37.2
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 4.0e-24 115.5 152 46.7
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 4.0e-24 115.5 152 46.7
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.0e-24 115.5 153 45.8
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 9.0e-24 114.4 152 46.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 4.4e-23 112.1 221 37.1
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.3e-22 110.5 148 45.3
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 6.4e-22 108.2 150 46.0
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 2.4e-21 106.3 65 69.2
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.0e-19 99.4 66 65.2
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 3.0e-19 99.4 128 47.7
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.9e-18 96.7 121 48.8
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 3.3e-18 95.9 151 40.4
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 4.9e-14 82.0 221 31.7
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 2.1e-12 76.6 199 30.7
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 3.9e-11 72.4 48 64.6
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 5.1e-11 72.0 107 43.9
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 6.7e-11 71.6 218 28.4
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.1e-10 70.9 117 35.0
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.5e-10 69.7 41 70.7
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.5e-10 69.7 41 70.7
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 1.6e-09 67.0 118 33.1
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.2e-07 60.8 114 29.8
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 3.4e-07 59.3 77 37.7


User provided reference genes

Program Settings