Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024331 Sechium edule HOM05D005327 ORTHO05D006655 3.5e-211 738.0 378 100.0
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 2.1e-155 552.7 395 75.2
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 8.3e-152 540.8 389 74.6
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 3.2e-151 538.9 395 73.7
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 1.5e-129 466.8 394 63.5
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 2.0e-129 466.5 394 64.0
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 2.2e-128 463.0 393 63.6
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 2.9e-128 462.6 385 63.6
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 2.4e-127 459.5 394 63.2
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 5.4e-127 458.4 394 61.9
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 1.2e-126 457.2 393 63.4
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 1.2e-126 457.2 380 64.2
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 1.6e-126 456.8 394 64.0
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 2.7e-126 456.1 401 62.8
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 2.7e-126 456.1 386 63.7
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 1.0e-125 454.1 393 62.8
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 3.0e-125 452.6 388 62.6
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 9.6e-124 447.6 397 60.7
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 1.3e-123 447.2 392 62.5
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 1.3e-123 447.2 393 62.3
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 1.6e-123 446.8 394 60.2
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 2.8e-123 446.0 386 63.2
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 4.8e-123 445.3 394 61.7
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 4.8e-123 445.3 393 61.8
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 6.2e-123 444.9 386 63.0
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 1.4e-122 443.7 390 61.3
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 1.8e-122 443.4 395 61.5
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.8e-122 443.4 390 61.8
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 2.4e-122 443.0 392 60.2
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 9.0e-122 441.0 393 60.8
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 1.5e-121 440.3 385 62.6
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 2.0e-121 439.9 394 60.4
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 4.5e-121 438.7 394 60.9
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 5.8e-121 438.3 395 61.3
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 9.9e-121 437.6 395 61.3
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 1.7e-120 436.8 395 60.5
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 3.8e-120 435.6 386 61.7
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 4.9e-120 435.3 386 61.9
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 6.4e-120 434.9 392 60.2
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 6.4e-120 434.9 395 60.5
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 6.4e-120 434.9 393 59.0
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 1.1e-119 434.1 402 61.9
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 1.1e-119 434.1 387 62.0
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 1.4e-119 433.7 393 60.3
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 1.4e-119 433.7 395 60.5
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 1.9e-119 433.3 393 60.3
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 2.4e-119 433.0 394 60.7
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 2.4e-119 433.0 393 59.3
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 3.2e-119 432.6 395 60.0
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 3.2e-119 432.6 394 60.7
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 4.2e-119 432.2 396 60.1
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 7.1e-119 431.4 393 59.5
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 3.5e-118 429.1 393 60.3
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 6.0e-118 428.3 392 60.2
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 1.8e-117 426.8 394 59.4
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 3.0e-117 426.0 430 56.3
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 1.5e-116 423.7 395 59.0
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 5.6e-116 421.8 402 59.0
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 1.6e-115 420.2 390 59.2
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 6.2e-115 418.3 390 58.5
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 6.9e-114 414.8 387 59.2
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 2.0e-113 413.3 487 50.3
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 2.6e-113 412.9 380 60.0
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 3.4e-113 412.5 393 57.3
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 4.5e-113 412.1 378 59.3
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 4.5e-113 412.1 463 51.8
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 1.7e-112 410.2 394 57.4
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 6.4e-112 408.3 379 60.2
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 3.5e-110 402.5 388 58.5
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.0e-109 401.0 388 58.2
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 1.0e-109 401.0 371 59.6
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 1.0e-109 401.0 420 56.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.3e-108 395.6 388 57.5
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 9.0e-106 387.9 393 54.5
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 1.5e-105 387.1 295 68.8
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 3.8e-104 382.5 414 52.2
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 4.9e-104 382.1 414 51.9
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 7.1e-103 378.3 488 49.0
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 2.7e-102 376.3 416 51.4
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 3.5e-102 375.9 392 54.1
BolC5t34395H Brassica oleracea HOM05D005327 ORTHO05D006655 3.9e-101 372.5 373 56.8
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 6.3e-99 365.2 372 55.6
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 1.4e-98 364.0 391 51.9
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 9.3e-95 351.3 396 52.0
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 2.1e-94 350.1 392 51.3
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 2.7e-94 349.7 388 51.3
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 8.7e-93 344.7 373 52.3
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 5.3e-90 335.5 480 44.6
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 5.9e-89 332.0 316 57.6
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 7.7e-89 331.6 272 62.1
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 2.2e-88 330.1 311 59.2
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 1.1e-84 317.8 386 48.4
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 3.7e-83 312.8 369 50.4
QL11p009789 Quercus lobata HOM05D005327 ORTHO05D006655 3.1e-82 309.7 417 47.2
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 6.1e-78 295.4 235 69.8
Sopen00g011970 Solanum pennellii HOM05D005327 ORTHO05D006655 1.0e-77 294.7 268 57.8
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 3.5e-73 279.6 398 41.5
Solyc09g031880.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 2.5e-71 273.5 358 48.6
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 7.5e-68 261.9 370 45.1
BcaC05g29437 Brassica carinata HOM05D005327 ORTHO05D006655 1.3e-67 261.2 209 62.7
Gohir.A05G001766 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.4e-66 257.7 185 69.2
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 2.5e-63 246.9 259 57.5
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 3.0e-61 240.0 235 59.6
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.3e-59 234.6 248 54.8
CSS0021007 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 4.8e-59 232.6 175 66.9
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 2.4e-58 230.3 248 53.6
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 1.2e-57 228.0 338 46.2
Lj5A731T8 Lonicera japonica HOM05D005327 ORTHO05D006655 1.0e-53 214.9 158 66.5
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 1.6e-46 191.0 175 61.7
HPP92_000243 Vanilla planifolia HOM05D005327 ORTHO05D006655 5.2e-45 186.0 136 64.7
SEGI_09644 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 8.3e-43 178.7 163 55.8
AagrBONN_evm.TU.Sc2ySwM_344.300 Anthoceros agrestis HOM05D005327 ORTHO05D006655 8.0e-38 162.2 290 39.7
SEGI_13698 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 7.0e-34 149.1 114 63.2
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 2.0e-33 147.5 396 29.8
PGR044G0615 Punica granatum HOM05D005327 ORTHO05D006655 8.6e-32 142.1 172 50.0
Thhalv10026961m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 3.4e-28 130.2 110 65.5
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 6.6e-24 115.9 82 70.7
QL11p009727 Quercus lobata HOM05D005327 ORTHO05D006655 1.8e-21 107.8 79 67.1
Gohir.A05G001832 Gossypium hirsutum HOM05D005327 ORTHO05D006655 4.0e-21 106.7 122 51.6
A01p41940 Brassica napus HOM05D005327 ORTHO05D006655 3.4e-20 103.6 86 57.0
Sopen09g026020 Solanum pennellii HOM05D005327 ORTHO05D006655 2.9e-19 100.5 71 69.0
HPP92_000244 Vanilla planifolia HOM05D005327 ORTHO05D006655 1.2e-17 95.1 119 49.6
Gohir.D05G309350 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.3e-16 91.7 64 70.3
Gorai.009G329700 Gossypium raimondii HOM05D005327 ORTHO05D006655 2.3e-16 90.9 64 70.3
Gohir.D09G007150 Gossypium hirsutum HOM05D005327 ORTHO05D006655 5.1e-16 89.7 64 68.8
COL.COLO4_23452 Corchorus olitorius HOM05D005327 ORTHO05D006655 1.5e-15 88.2 157 41.4
C03p49960 Brassica napus HOM05D005327 ORTHO05D006655 7.6e-12 75.9 49 73.5
BcaC01g03662 Brassica carinata HOM05D005327 ORTHO05D006655 6.4e-11 72.8 49 71.4
BcaC01g03663 Brassica carinata HOM05D005327 ORTHO05D006655 6.4e-11 72.8 49 71.4
C03p47280 Brassica napus HOM05D005327 ORTHO05D006655 1.1e-10 72.0 44 77.3
BolC3t17287H Brassica oleracea HOM05D005327 ORTHO05D006655 1.4e-10 71.6 44 77.3
QL11p009732 Quercus lobata HOM05D005327 ORTHO05D006655 3.2e-10 70.5 81 49.4
QL11p009748 Quercus lobata HOM05D005327 ORTHO05D000004 2.1e-09 67.8 59 66.1
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 1.5e-07 61.6 266 26.7
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 1.9e-07 61.2 296 25.7
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 1.3e-06 58.5 188 30.3
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.6e-06 58.2 105 35.2
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 4.8e-06 56.6 307 25.1


User provided reference genes

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