Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.7e-192 676.0 389 100.0
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.1e-122 444.1 437 66.6
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 7.1e-122 441.4 443 64.8
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.9e-114 416.8 444 64.2
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.1e-101 374.4 334 64.1
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 5.3e-101 372.1 302 68.2
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 9.9e-100 367.9 253 77.5
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.3e-99 367.5 454 55.9
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.3e-99 367.5 408 57.8
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.7e-99 367.1 262 72.9
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.7e-99 367.1 328 64.0
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.9e-99 366.3 277 72.2
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 4.9e-99 365.5 458 53.9
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 4.9e-99 365.5 246 77.2
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 4.9e-99 365.5 281 70.8
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.4e-99 365.2 286 68.9
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.1e-98 364.4 298 68.8
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.4e-98 364.0 238 77.3
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.4e-98 364.0 266 72.2
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 4.2e-98 362.5 259 74.5
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 4.2e-98 362.5 312 65.4
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 5.4e-98 362.1 252 75.0
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.6e-97 360.5 286 67.8
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.6e-97 360.5 436 56.0
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 2.1e-97 360.1 264 72.3
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 2.1e-97 360.1 264 72.3
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.1e-97 360.1 274 70.8
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 3.5e-97 359.4 256 74.2
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 3.5e-97 359.4 271 70.8
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 3.5e-97 359.4 253 73.5
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.0e-96 357.8 252 74.2
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.0e-96 357.8 286 68.5
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.3e-96 357.5 445 52.4
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.8e-96 357.1 256 73.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.8e-96 357.1 396 56.3
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.3e-96 356.7 302 64.2
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 3.0e-96 356.3 256 73.4
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 3.0e-96 356.3 261 72.4
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 5.1e-96 355.5 252 73.8
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.1e-96 355.5 273 70.3
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 6.7e-96 355.1 245 74.7
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 8.7e-96 354.8 252 73.8
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.1e-95 354.4 384 56.5
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.1e-95 354.4 249 75.1
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 2.5e-95 353.2 258 72.9
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.3e-95 352.8 245 74.7
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 4.3e-95 352.4 276 69.9
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 3.7e-94 349.4 282 68.1
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 3.7e-94 349.4 256 72.3
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.2e-94 348.6 404 55.7
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 8.1e-94 348.2 444 53.4
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.1e-93 347.8 337 63.8
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.4e-93 347.4 409 53.5
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.4e-93 347.4 438 54.6
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.8e-93 347.1 425 52.7
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.8e-93 347.1 303 64.4
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 4.0e-93 345.9 347 60.2
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 5.3e-93 345.5 240 73.8
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 5.3e-93 345.5 240 73.8
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 6.9e-93 345.1 260 71.5
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.2e-92 344.4 260 71.2
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 2.0e-92 343.6 260 71.2
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.6e-92 343.2 415 55.9
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 3.4e-92 342.8 448 54.5
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.4e-92 342.8 429 55.9
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.5e-92 342.4 239 73.6
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 5.8e-92 342.0 248 72.2
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 7.6e-92 341.7 307 62.9
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.0e-91 341.3 262 68.7
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.8e-91 339.3 253 70.4
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 3.2e-90 336.3 284 65.8
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 4.2e-90 335.9 296 63.5
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 4.2e-90 335.9 438 51.8
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.2e-89 334.3 245 71.4
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 1.6e-89 334.0 310 63.2
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.1e-89 333.6 245 71.0
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.3e-88 330.9 230 73.9
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 8.7e-88 328.2 400 54.8
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.1e-87 327.8 258 65.1
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.1e-87 327.8 257 68.9
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.5e-87 327.4 231 71.4
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.3e-87 325.9 402 53.2
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.7e-87 325.5 245 70.2
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 7.4e-87 325.1 243 70.0
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.6e-86 323.9 444 50.2
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.6e-86 323.9 352 56.5
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 2.1e-86 323.6 361 57.3
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 4.8e-86 322.4 433 50.3
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.4e-85 320.9 313 57.5
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.8e-85 320.5 344 56.7
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.1e-85 319.3 304 61.5
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 6.9e-85 318.5 262 63.4
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 9.0e-85 318.2 233 71.7
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.6e-84 316.6 451 49.4
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.4e-84 316.2 402 53.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.3e-83 314.3 257 63.8
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.3e-83 314.3 337 57.3
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 6.5e-83 312.0 258 63.2
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.1e-82 311.2 253 64.0
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.1e-82 311.2 253 64.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.4e-82 310.8 238 66.4
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.4e-82 310.8 341 57.2
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.2e-82 309.3 258 64.0
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 7.1e-82 308.5 334 57.2
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.2e-81 307.8 340 55.3
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 5.1e-80 302.4 249 65.1
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 7.4e-79 298.5 391 48.8
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 1.3e-78 297.7 388 50.8
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 2.8e-78 296.6 283 57.6
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 2.0e-76 290.4 408 48.3
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 3.4e-76 289.7 213 70.4
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.2e-75 287.0 437 46.7
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 5.0e-75 285.8 401 46.1
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 3.6e-73 279.6 222 63.1
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 6.7e-72 275.4 373 46.6
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 3.3e-71 273.1 276 58.7
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.3e-67 261.2 353 48.2
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.2e-60 238.0 244 52.0
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 7.0e-53 212.2 296 43.6
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.4e-48 198.0 252 46.4
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 2.6e-47 193.7 249 45.4
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.5e-42 177.2 255 36.9
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 3.6e-41 173.3 228 39.9
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 4.7e-41 172.9 112 75.0
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 4.4e-39 166.4 246 39.0
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 7.7e-36 155.6 242 41.7
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 9.5e-34 148.7 238 37.8
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 1.2e-33 148.3 89 78.7
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.1e-33 147.5 241 36.5
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.3e-32 144.1 123 56.1
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.1e-29 135.2 226 38.1
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.5e-28 130.2 237 32.5
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.3e-26 123.6 205 31.2
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 1.0e-24 118.6 146 43.8
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 9.8e-23 112.1 220 35.9
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.4e-21 108.2 249 28.1
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 2.4e-21 107.5 249 28.5
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.3e-19 101.7 202 42.1
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.5e-15 88.2 102 49.0
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.5e-15 88.2 127 42.5
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 9.8e-15 85.5 135 41.5
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 8.3e-14 82.4 274 36.5
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 4.6e-12 76.6 105 41.9
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 7.8e-12 75.9 105 42.9
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 2.3e-11 74.3 211 28.4
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 3.0e-11 73.9 108 41.7
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.5e-10 70.9 56 50.0
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 2.5e-10 70.9 138 35.5
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 3.3e-10 70.5 178 32.0
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 7.3e-10 69.3 55 49.1
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 2.8e-09 67.4 43 55.8
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 2.3e-08 64.3 57 54.4
Zm00001eb272130 Zea mays HOM05D004657 ORTHO05D005562 2.9e-06 57.4 53 54.7


User provided reference genes

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