Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 3.4e-71 271.6 136 100.0
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 1.0e-59 233.4 136 86.8
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.0e-59 233.4 136 85.3
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 3.8e-54 214.9 136 79.4
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 6.4e-54 214.2 129 82.2
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 1.4e-53 213.0 132 78.0
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 5.4e-53 211.1 135 78.5
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 5.4e-53 211.1 128 80.5
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 5.4e-53 211.1 135 77.0
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 9.3e-53 210.3 127 79.5
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.1e-52 209.1 135 79.3
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.7e-51 206.1 128 77.3
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.3e-51 205.7 135 74.8
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 3.0e-51 205.3 113 85.8
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 3.9e-51 204.9 132 74.2
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 3.9e-51 204.9 129 79.1
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 5.1e-51 204.5 129 77.5
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 6.6e-51 204.1 127 77.2
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 6.6e-51 204.1 120 83.3
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 6.6e-51 204.1 135 76.3
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 8.7e-51 203.8 136 74.3
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 8.7e-51 203.8 128 76.6
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.5e-50 203.0 118 80.5
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.9e-50 202.6 136 73.5
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 2.5e-50 202.2 132 74.2
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 2.5e-50 202.2 135 75.6
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 4.3e-50 201.4 151 68.9
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 5.6e-50 201.1 136 75.0
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 9.6e-50 200.3 135 74.1
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 9.6e-50 200.3 135 76.3
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 9.6e-50 200.3 135 76.3
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.3e-49 199.9 136 72.1
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.3e-49 199.9 119 77.3
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.6e-49 199.5 136 71.3
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 1.6e-49 199.5 135 74.1
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.6e-49 198.4 136 70.6
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 6.2e-49 197.6 119 78.2
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 8.1e-49 197.2 119 81.5
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.1e-48 196.8 136 71.3
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.1e-48 196.8 128 74.2
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.4e-48 196.4 129 76.0
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 1.4e-48 196.4 129 70.5
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 1.4e-48 196.4 129 70.5
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.4e-48 196.4 129 76.0
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.8e-48 196.1 136 70.6
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 2.4e-48 195.7 129 69.8
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 4.0e-48 194.9 119 75.6
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 4.0e-48 194.9 120 78.3
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 5.3e-48 194.5 122 73.8
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 5.3e-48 194.5 129 75.2
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 9.0e-48 193.7 119 75.6
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 9.0e-48 193.7 119 75.6
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 9.0e-48 193.7 119 75.6
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.5e-47 193.0 126 70.6
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 1.5e-47 193.0 119 74.8
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 1.5e-47 193.0 119 74.8
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 1.5e-47 193.0 119 74.8
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.5e-47 193.0 129 72.9
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 2.0e-47 192.6 120 75.8
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 2.6e-47 192.2 120 75.8
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 2.6e-47 192.2 120 75.8
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 2.6e-47 192.2 118 76.3
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 2.6e-47 192.2 127 76.4
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 3.4e-47 191.8 119 74.8
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 7.6e-47 190.7 120 77.5
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 1.3e-46 189.9 137 71.5
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.7e-46 189.5 122 75.4
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 2.9e-46 188.7 126 73.8
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.9e-46 188.7 154 63.6
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 2.9e-46 188.7 135 73.3
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 2.9e-46 188.7 145 68.3
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 3.8e-46 188.3 128 71.1
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 3.8e-46 188.3 135 68.9
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 3.8e-46 188.3 123 74.0
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 3.8e-46 188.3 121 76.0
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 4.9e-46 188.0 119 72.3
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 4.9e-46 188.0 128 70.3
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 4.9e-46 188.0 110 79.1
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.4e-45 186.4 113 77.0
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-45 186.4 113 77.0
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 1.4e-45 186.4 114 74.6
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.9e-45 186.0 118 75.4
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 2.4e-45 185.7 119 73.9
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.2e-45 185.3 121 71.9
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.2e-45 185.3 121 71.9
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 1.6e-44 183.0 125 70.4
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 1.6e-44 183.0 113 77.9
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 2.1e-44 182.6 120 75.0
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 4.6e-44 181.4 127 68.5
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 4.6e-44 181.4 110 77.3
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 4.6e-44 181.4 120 74.2
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 6.0e-44 181.0 119 76.5
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.3e-43 179.9 118 73.7
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.3e-43 179.9 150 63.3
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.3e-43 179.9 118 72.9
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 2.3e-43 179.1 120 73.3
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 2.3e-43 179.1 109 76.1
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 5.1e-43 177.9 120 74.2
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.1e-42 176.8 118 73.7
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.5e-42 176.4 118 73.7
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.5e-42 176.4 127 72.4
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.9e-42 176.0 120 72.5
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 4.3e-42 174.9 123 70.7
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.3e-42 174.9 121 68.6
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 9.6e-42 173.7 110 73.6
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 2.2e-38 162.5 134 58.2
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 2.5e-29 132.5 80 81.2
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 4.8e-25 118.2 67 83.6
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 8.2e-25 117.5 143 44.8
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 1.1e-24 117.1 112 51.8
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.1e-24 117.1 73 75.3
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.4e-24 116.7 83 66.3
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 2.4e-24 115.9 125 48.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 6.9e-24 114.4 68 77.9
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 6.9e-24 114.4 73 72.6
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 1.2e-23 113.6 68 73.5
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 1.2e-23 113.6 71 70.4
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 5.9e-23 111.3 68 72.1
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 7.6e-23 110.9 68 70.6
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 7.6e-23 110.9 67 73.1
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 3.8e-22 108.6 65 76.9
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.5e-18 96.7 68 76.5
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 7.4e-18 94.4 71 66.2
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 9.7e-18 94.0 59 69.5
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 1.7e-17 93.2 89 59.6
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 3.7e-17 92.0 114 41.2
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 9.1e-16 87.4 68 72.1
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.2e-15 87.0 52 78.8
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.2e-15 87.0 68 67.6
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 7.7e-15 84.3 63 60.3
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.0e-14 84.0 57 77.2
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 2.9e-14 82.4 52 73.1
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 3.8e-14 82.0 52 75.0
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 5.0e-14 81.6 108 43.5
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 5.5e-13 78.2 127 38.6
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 1.2e-12 77.0 57 64.9
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 1.8e-11 73.2 48 70.8
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 2.3e-11 72.8 46 71.7
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 3.9e-11 72.0 62 58.1
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 6.7e-11 71.2 46 69.6
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 7.4e-10 67.8 45 68.9


User provided reference genes

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