Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024262 Sechium edule HOM05D007541 ORTHO05D009404 2.1e-51 205.7 124 100.0
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 2.0e-22 109.4 66 80.3
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 5.9e-22 107.8 68 77.9
ClCG05G023820 Citrullus lanatus HOM05D007541 ORTHO05D009404 5.0e-21 104.8 111 56.8
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 4.8e-16 88.2 124 42.7
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 8.5e-13 77.4 67 61.2
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.1e-12 77.0 69 56.5
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 1.1e-12 77.0 67 61.2
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 3.2e-12 75.5 65 61.5
Duzib268G0968 Durio zibethinus HOM05D007541 ORTHO05D009404 7.2e-12 74.3 69 55.1
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 7.2e-12 74.3 67 53.7
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.2e-11 73.6 69 55.1
PGR102G1405 Punica granatum HOM05D007541 ORTHO05D009404 1.2e-11 73.6 71 50.7
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 1.6e-11 73.2 67 56.7
RcHm_v2.0_Chr4g0438701 Rosa chinensis HOM05D007541 ORTHO05D009404 2.1e-11 72.8 68 54.4
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 3.6e-11 72.0 65 56.9
Duzib248G1062 Durio zibethinus HOM05D007541 ORTHO05D009404 4.7e-11 71.6 72 52.8
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 4.7e-11 71.6 122 42.6
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 6.1e-11 71.2 69 49.3
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 6.1e-11 71.2 69 49.3
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 8.0e-11 70.9 63 55.6
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 8.0e-11 70.9 63 55.6
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 8.0e-11 70.9 63 55.6
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 8.0e-11 70.9 71 53.5
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 1.0e-10 70.5 63 55.6
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 1.0e-10 70.5 63 55.6
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 1.8e-10 69.7 73 50.7
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 1.8e-10 69.7 73 50.7
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 3.0e-10 68.9 73 50.7
Thecc.02G334900 Theobroma cacao HOM05D007541 ORTHO05D009404 6.8e-10 67.8 77 48.1
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 8.8e-10 67.4 73 47.9
CiPaw.06G090800 Carya illinoinensis HOM05D007541 ORTHO05D009404 8.8e-10 67.4 130 39.2
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 1.2e-09 67.0 73 50.7
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 1.2e-09 67.0 73 50.7
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 1.2e-09 67.0 65 50.8
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 1.2e-09 67.0 65 50.8
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 1.5e-09 66.6 69 50.7
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.5e-09 66.6 65 52.3
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 1.5e-09 66.6 65 52.3
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 2.0e-09 66.2 65 50.8
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 2.0e-09 66.2 65 50.8
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 2.6e-09 65.9 65 50.8
FAN17G1776 Fragaria x ananassa HOM05D007541 ORTHO05D009404 3.4e-09 65.5 68 51.5
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 3.4e-09 65.5 69 47.8
QL03p070744 Quercus lobata HOM05D007541 ORTHO05D009404 3.4e-09 65.5 63 57.1
Lalb_Chr17g0341081 Lupinus albus HOM05D007541 ORTHO05D009404 4.4e-09 65.1 124 39.5
FvH4_4g30410 Fragaria vesca HOM05D007541 ORTHO05D009404 5.7e-09 64.7 68 51.5
Hma1.2p1_0354F.1_g133580 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 5.7e-09 64.7 122 36.1
VMungo1215G1351 Vigna mungo HOM05D007541 ORTHO05D009404 5.7e-09 64.7 62 48.4
QL03p071059 Quercus lobata HOM05D007541 ORTHO05D009404 7.5e-09 64.3 63 57.1
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 9.8e-09 63.9 74 47.3
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 9.8e-09 63.9 62 48.4
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 9.8e-09 63.9 62 48.4
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 1.3e-08 63.5 63 49.2
Potri.008G093500 Populus trichocarpa HOM05D007541 ORTHO05D009404 1.7e-08 63.2 71 52.1
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 2.2e-08 62.8 64 50.0
Phvul.002G081400 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 2.2e-08 62.8 129 34.9
FAN22G1195 Fragaria x ananassa HOM05D007541 ORTHO05D009404 2.8e-08 62.4 68 50.0
Prupe.1G283100 Prunus persica HOM05D007541 ORTHO05D009404 4.9e-08 61.6 82 47.6
TPR.G34056 Trifolium pratense HOM05D007541 ORTHO05D009404 4.9e-08 61.6 69 47.8
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 6.3e-08 61.2 63 52.4
FAN12G3046 Fragaria x ananassa HOM05D007541 ORTHO05D009404 8.3e-08 60.8 69 50.7
Glyma.02G115000 Glycine max HOM05D007541 ORTHO05D009404 8.3e-08 60.8 62 46.8
Glyma.01G056400 Glycine max HOM05D007541 ORTHO05D009404 1.1e-07 60.5 62 48.4
Glyma.20G027000 Glycine max HOM05D007541 ORTHO05D009404 1.4e-07 60.1 65 46.2
TPR.G741 Trifolium pratense HOM05D007541 ORTHO05D009404 1.4e-07 60.1 69 47.8
TWI79G0012 Tripterygium wilfordii HOM05D007541 ORTHO05D009404 1.8e-07 59.7 67 47.8
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 2.4e-07 59.3 67 47.8
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 2.4e-07 59.3 72 44.4
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 2.4e-07 59.3 72 50.0
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 3.1e-07 58.9 68 50.0
Lalb_Chr05g0220081 Lupinus albus HOM05D007541 ORTHO05D009404 4.1e-07 58.5 66 48.5
Manes.05G108300 Manihot esculenta HOM05D007541 ORTHO05D009404 5.4e-07 58.2 56 57.1
Lalb_Chr10g0098651 Lupinus albus HOM05D007541 ORTHO05D009404 7.0e-07 57.8 62 56.5
Lsat_1_v5_gn_8_48181 Lactuca sativa HOM05D007541 ORTHO05D009404 1.2e-06 57.0 135 32.6
Ciclev10033671m.g Citrus clementina HOM05D007541 ORTHO05D009404 2.0e-06 56.2 62 51.6
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 2.0e-06 56.2 31 77.4
Medtr5g043830 Medicago truncatula HOM05D007541 ORTHO05D009404 2.7e-06 55.8 62 46.8
Hma1.2p1_0322F.1_g124880 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 5.9e-06 54.7 51 56.9
Lsat_1_v5_gn_4_12120 Lactuca sativa HOM05D007541 ORTHO05D009404 5.9e-06 54.7 74 43.2
Phvul.002G168200 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 7.7e-06 54.3 64 48.4


User provided reference genes

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