Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 0.0e+00 1234.2 641 100.0
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.4e-305 1052.4 633 85.5
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.1e-300 1036.2 631 84.9
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 2.6e-283 978.4 631 81.8
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.3e-218 762.7 630 63.8
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.3e-216 756.9 635 62.7
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 2.4e-215 752.7 631 63.4
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.9e-214 747.3 623 63.2
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.1e-212 743.8 628 62.3
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 5.4e-212 741.5 632 62.5
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.2e-211 740.3 623 62.6
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.6e-211 740.0 623 62.8
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.6e-211 738.4 621 62.5
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 1.3e-210 736.9 630 61.6
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 3.0e-210 735.7 632 61.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.3e-208 730.3 631 60.5
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 2.4e-207 726.1 632 60.4
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.4e-207 726.1 631 60.5
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.4e-207 726.1 631 59.7
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 4.0e-207 725.3 632 60.4
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 2.6e-206 722.6 632 61.1
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 3.4e-206 722.2 636 60.2
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 4.5e-206 721.8 629 60.6
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.7e-205 719.9 631 59.7
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 6.4e-205 718.0 632 60.6
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.9e-204 716.5 625 61.6
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.8e-202 709.9 662 59.5
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 5.3e-199 698.4 632 58.4
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 5.3e-199 698.4 633 59.6
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.2e-198 697.2 633 59.1
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 5.8e-198 694.9 632 59.2
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 2.5e-196 689.5 673 57.2
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 7.9e-195 684.5 620 56.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 5.1e-194 681.8 637 56.7
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 8.7e-194 681.0 632 57.1
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 9.7e-193 677.6 644 56.5
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 6.3e-192 674.9 620 56.9
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 3.1e-191 672.5 620 56.3
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 6.9e-191 671.4 626 58.3
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.0e-190 669.8 629 56.6
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 2.6e-190 669.5 628 57.8
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 7.6e-190 667.9 628 57.6
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 7.6e-190 667.9 566 62.7
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 1.7e-189 666.8 630 57.9
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.2e-189 666.4 631 57.4
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 5.0e-189 665.2 615 58.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 6.5e-189 664.8 630 57.8
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 6.5e-189 664.8 630 57.8
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.4e-188 663.7 627 57.1
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.2e-187 660.6 628 57.0
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 1.2e-187 660.6 619 56.5
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.2e-187 660.6 646 54.6
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 2.1e-187 659.8 623 54.3
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.7e-187 659.4 631 57.4
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 2.7e-187 659.4 628 57.0
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 2.7e-187 659.4 619 56.5
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 6.1e-187 658.3 631 56.9
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 3.3e-185 652.5 659 54.2
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 9.7e-185 651.0 591 59.4
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 8.2e-184 647.9 623 54.4
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.5e-182 643.7 626 56.4
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 5.9e-182 641.7 631 53.9
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.3e-181 640.6 636 55.2
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 2.3e-178 629.8 569 58.5
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.0e-178 629.4 623 53.6
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 2.6e-177 626.3 567 59.3
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 3.3e-177 625.9 569 58.0
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 4.4e-177 625.5 617 52.0
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 1.4e-175 620.5 637 52.7
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 9.4e-172 607.8 613 52.2
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.6e-171 607.1 507 63.1
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 2.1e-171 606.7 629 53.1
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 3.6e-171 605.9 626 51.9
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 3.6e-171 605.9 507 62.9
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.4e-170 604.0 538 59.9
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.3e-170 603.2 626 52.2
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.3e-169 599.4 595 53.6
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 5.7e-169 598.6 623 50.7
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 5.3e-167 592.0 618 51.0
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.2e-163 580.9 633 53.9
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 6.1e-163 578.6 518 59.7
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 3.0e-162 576.2 527 57.7
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 6.7e-162 575.1 660 49.2
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.3e-161 572.8 629 47.9
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 3.5e-158 562.8 622 46.9
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 5.9e-158 562.0 628 49.7
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 4.4e-153 545.8 628 50.2
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 9.8e-153 544.7 610 52.5
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.7e-152 543.9 451 63.9
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 5.4e-151 538.9 542 54.2
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.6e-147 527.3 557 51.7
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.8e-146 523.9 512 55.3
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 9.2e-143 511.5 465 59.1
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.6e-139 500.7 467 57.2
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 4.0e-138 496.1 659 44.3
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 1.1e-132 478.0 636 47.0
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 7.5e-121 438.7 391 56.8
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 7.1e-119 432.2 592 46.5
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 3.2e-111 406.8 362 58.6
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 4.0e-106 389.8 469 44.8
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.5e-92 344.0 628 33.6
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.3e-88 331.6 652 32.1
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 6.0e-86 322.8 390 52.1
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.5e-76 291.6 628 32.5
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 1.0e-72 278.9 520 37.7
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 1.0e-72 278.9 520 37.7
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 9.4e-71 272.3 625 30.9
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.6e-70 271.6 517 32.1
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 3.3e-68 263.8 379 44.1
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 5.7e-60 236.5 367 42.2
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-52 212.2 260 43.8
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 8.5e-48 196.1 179 57.0
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.6e-46 191.8 279 41.6
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.4e-45 188.7 279 41.2
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 2.2e-40 171.4 398 27.1
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 5.5e-39 166.8 142 57.7
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.0e-37 160.6 145 60.7
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 4.1e-34 150.6 221 42.5
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 4.5e-33 147.1 143 52.4
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 7.7e-33 146.4 165 50.3
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.7e-32 145.2 168 47.6
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.2e-31 139.8 413 31.2
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 4.7e-30 137.1 168 45.2
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.7e-30 137.1 372 34.4
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.8e-29 135.2 170 43.5
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 7.0e-26 123.2 149 43.6
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 5.6e-23 113.6 329 29.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 9.5e-23 112.8 155 42.6
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 2.8e-22 111.3 412 28.9
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.6e-17 95.5 122 41.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 2.7e-17 94.7 100 48.0
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 7.8e-17 93.2 65 66.2
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.3e-16 91.7 62 72.6
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.9e-15 88.6 80 56.2
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.8e-12 77.0 130 33.8
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 7.5e-12 76.6 55 67.3
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.9e-11 73.9 44 79.5
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 6.4e-11 73.6 88 51.1
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.1e-10 70.1 65 49.2
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 3.9e-08 64.3 138 31.2
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 3.9e-08 64.3 42 73.8
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 5.1e-08 63.9 75 42.7
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 3.3e-07 61.2 41 80.5
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.8e-06 58.2 82 41.5


User provided reference genes

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