Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.1e-281 972.6 466 100.0
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.1e-233 811.6 481 82.7
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.2e-229 799.7 452 84.5
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 2.1e-229 798.9 480 82.1
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 6.1e-229 797.3 481 81.9
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 6.3e-210 734.2 438 79.2
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.1e-206 723.4 441 77.3
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 7.2e-206 720.7 441 77.6
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 9.8e-203 710.3 449 75.3
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 8.3e-202 707.2 436 77.1
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 4.1e-201 704.9 445 75.3
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 1.6e-200 703.0 392 82.9
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.7e-200 702.2 436 77.1
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 3.5e-200 701.8 448 77.0
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 5.9e-200 701.0 439 76.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 5.9e-200 701.0 456 72.6
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.0e-199 700.3 439 76.3
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.3e-199 699.9 432 77.3
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.5e-198 694.5 457 73.5
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.2e-197 693.3 433 75.1
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.6e-197 693.0 449 73.9
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 2.1e-197 692.6 446 74.0
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.1e-197 692.6 440 76.4
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.6e-197 691.8 435 75.9
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 4.7e-197 691.4 430 76.5
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 4.7e-197 691.4 432 76.9
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 6.1e-197 691.0 427 75.9
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 8.0e-197 690.6 459 73.0
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.4e-196 689.9 428 75.7
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.4e-196 689.9 449 75.3
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 4.0e-196 688.3 433 75.5
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.2e-195 686.8 455 74.3
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 1.5e-195 686.4 457 72.2
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 2.0e-195 686.0 480 71.2
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 5.7e-195 684.5 464 72.4
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 5.7e-195 684.5 435 74.7
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 1.3e-194 683.3 437 75.7
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.7e-194 682.9 431 75.6
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.7e-194 681.8 431 74.9
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.9e-194 681.4 433 74.1
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 6.3e-194 681.0 446 72.6
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 1.1e-193 680.2 428 74.8
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.1e-193 680.2 438 74.4
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.1e-193 680.2 441 73.9
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.8e-193 679.5 446 72.2
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 2.4e-193 679.1 456 72.4
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.4e-193 679.1 428 75.9
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.4e-193 679.1 451 72.9
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 1.2e-192 676.8 446 72.2
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 1.2e-192 676.8 460 72.6
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.6e-192 676.4 433 73.4
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.6e-192 676.4 464 71.3
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 3.5e-192 675.2 446 72.0
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 3.5e-192 675.2 435 74.5
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.5e-192 675.2 439 74.0
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.3e-191 673.3 456 71.1
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.3e-191 673.3 432 75.0
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.7e-191 672.9 432 74.3
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 2.3e-191 672.5 363 83.5
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 2.9e-191 672.2 432 74.8
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 3.9e-191 671.8 460 70.7
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 5.0e-191 671.4 446 71.3
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.0e-191 671.4 430 75.3
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 6.6e-191 671.0 363 83.5
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 8.6e-191 670.6 433 73.7
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 8.6e-191 670.6 432 74.8
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.5e-190 669.8 493 69.4
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.9e-190 669.5 439 72.4
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.5e-190 669.1 443 73.4
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 3.3e-190 668.7 460 70.0
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 3.3e-190 668.7 460 69.8
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 3.3e-190 668.7 431 73.1
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 4.3e-190 668.3 437 73.7
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 5.6e-190 667.9 392 79.3
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 7.3e-190 667.5 447 72.0
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 1.2e-189 666.8 435 73.8
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.2e-189 666.8 448 71.9
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 2.8e-189 665.6 434 73.5
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 3.6e-189 665.2 446 72.2
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 3.6e-189 665.2 445 71.2
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 8.0e-189 664.1 447 72.0
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.0e-189 664.1 448 71.7
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.0e-188 663.7 447 72.0
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.1e-188 662.1 459 70.8
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 4.0e-188 661.8 440 71.1
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 5.2e-188 661.4 439 71.3
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 5.2e-188 661.4 455 70.3
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.2e-188 661.4 460 70.7
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.2e-188 661.4 459 70.4
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 5.2e-188 661.4 437 71.2
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 5.2e-188 661.4 439 73.8
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 2.0e-187 659.4 447 71.8
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 9.8e-187 657.1 452 70.1
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 2.2e-186 656.0 439 72.4
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 3.7e-186 655.2 447 71.4
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.9e-185 652.9 438 71.0
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 6.0e-184 647.9 439 70.2
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 7.8e-184 647.5 431 71.5
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 3.0e-183 645.6 425 72.9
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 5.0e-183 644.8 402 74.1
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.5e-182 643.3 516 63.2
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.5e-182 643.3 402 74.1
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 4.3e-182 641.7 422 71.8
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 9.5e-182 640.6 378 79.1
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 2.1e-181 639.4 382 78.3
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 3.6e-181 638.6 458 68.8
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 4.7e-181 638.3 429 72.7
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.8e-180 636.3 429 72.0
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 4.0e-180 635.2 442 69.2
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 9.8e-179 630.6 431 72.2
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 4.1e-177 625.2 438 70.1
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 2.8e-173 612.5 443 66.6
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 9.9e-171 604.0 451 65.9
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.6e-168 596.7 426 68.5
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 2.3e-167 592.8 322 84.8
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 5.1e-167 591.7 324 83.3
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.1e-166 590.5 437 64.5
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 9.6e-166 587.4 442 66.5
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.8e-164 583.2 344 78.5
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 2.9e-162 575.9 423 67.1
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.3e-159 566.2 370 70.3
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 3.1e-156 555.8 407 65.8
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.1e-152 543.1 290 85.9
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.5e-152 542.3 289 85.1
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.0e-151 539.3 291 84.2
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 7.1e-145 518.1 287 80.5
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-142 510.8 334 67.4
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 5.3e-140 501.9 338 72.5
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 3.2e-137 492.7 266 83.8
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.1e-133 479.9 393 63.6
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.1e-132 477.6 302 77.2
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 7.4e-126 454.9 378 55.8
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.9e-119 432.6 311 69.1
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.3e-117 427.6 296 70.3
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 2.4e-116 423.3 285 67.4
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.1e-108 394.8 342 52.3
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.6e-94 350.1 318 52.8
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.4e-92 344.4 266 66.9
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.8e-87 327.4 338 47.6
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.3e-65 253.1 138 82.6
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 6.2e-64 249.2 179 65.9
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.7e-53 213.4 109 87.2
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.7e-51 207.2 127 73.2
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.9e-50 203.4 119 73.9
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.1e-49 201.8 138 66.7
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.2e-43 181.8 127 65.4
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.5e-30 138.3 85 77.6
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.5e-30 136.7 85 76.5
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 3.0e-26 124.0 101 59.4
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 3.0e-26 124.0 80 68.8
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.2e-12 77.4 52 69.2
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 4.6e-11 73.6 110 45.5
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 7.4e-09 66.2 125 36.0


User provided reference genes

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