Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024218 Sechium edule HOM05D000262 ORTHO05D000300 5.4e-26 120.2 58 100.0
MELO3C002647.2 Cucumis melo HOM05D000262 ORTHO05D000300 2.8e-14 81.3 50 76.0
CsaV3_1G033370 Cucumis sativus L. HOM05D000262 ORTHO05D000300 4.7e-14 80.5 50 74.0
ClCG03G007750 Citrullus lanatus HOM05D000262 ORTHO05D000300 2.6e-12 74.7 47 74.5
Sed0011158 Sechium edule HOM05D002603 ORTHO05D002907 2.6e-12 74.7 50 70.0
RcHm_v2.0_Chr5g0010741 Rosa chinensis HOM05D000262 ORTHO05D000300 5.4e-10 67.0 50 54.0
FAN11G1330 Fragaria x ananassa HOM05D000262 ORTHO05D000300 9.2e-10 66.2 50 52.0
FAN21G1672 Fragaria x ananassa HOM05D000262 ORTHO05D000300 9.2e-10 66.2 50 52.0
FAN25G0681 Fragaria x ananassa HOM05D000262 ORTHO05D000300 9.2e-10 66.2 50 52.0
FAN16G2588 Fragaria x ananassa HOM05D000262 ORTHO05D000300 1.6e-09 65.5 50 52.0
Aqoxy1G02068 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 3.5e-09 64.3 50 50.0
Glyma.05G157900 Glycine max HOM05D000262 ORTHO05D000300 3.5e-09 64.3 50 56.0
Peaxi162Scf01050g00228 Petunia axillaris HOM05D000262 ORTHO05D000300 3.5e-09 64.3 50 54.0
arahy.Tifrunner.gnm1.ann1.DU8VZ1 Arachis hypogaea HOM05D000262 ORTHO05D000300 6.0e-09 63.5 50 54.0
arahy.Tifrunner.gnm1.ann1.R4WH7M Arachis hypogaea HOM05D000262 ORTHO05D000300 6.0e-09 63.5 50 54.0
CsaV3_7G005660 Cucumis sativus L. HOM05D000262 ORTHO05D000300 6.0e-09 63.5 48 56.2
Nn1g09132 Nelumbo nucifera HOM05D000262 ORTHO05D000300 6.0e-09 63.5 50 56.0
FvH4_3g07830 Fragaria vesca HOM05D000262 ORTHO05D000300 7.8e-09 63.2 47 53.2
Nn1g04406 Nelumbo nucifera HOM05D000262 ORTHO05D000300 7.8e-09 63.2 50 54.0
MELO3C018725.2 Cucumis melo HOM05D000262 ORTHO05D000300 1.0e-08 62.8 48 56.2
TWI63G1327 Tripterygium wilfordii HOM05D000262 ORTHO05D000300 1.0e-08 62.8 54 48.1
Ciclev10017734m.g Citrus clementina HOM05D000262 ORTHO05D000300 1.7e-08 62.0 50 52.0
Ciclev10033767m.g Citrus clementina HOM05D000262 ORTHO05D000300 2.3e-08 61.6 47 57.4
Dinv40671 Davidia involucrata HOM05D000262 ORTHO05D000300 2.3e-08 61.6 50 50.0
MBI07_g03180_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D000300 2.3e-08 61.6 50 50.0
Dinv16762 Davidia involucrata HOM05D000262 ORTHO05D000300 3.0e-08 61.2 50 50.0
Hma1.2p1_0178F.1_g078840 Hydrangea macrophylla HOM05D000262 ORTHO05D000300 3.0e-08 61.2 50 56.0
Nitab4.5_0006225g0050 Nicotiana tabacum HOM05D000262 ORTHO05D000300 3.0e-08 61.2 47 53.2
Sabra04G0036700 Salix brachista HOM05D000262 ORTHO05D000300 3.0e-08 61.2 50 50.0
DCAR_021290 Daucus carota HOM05D000262 ORTHO05D000300 3.9e-08 60.8 49 55.1
MBI06_g26013_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D000300 3.9e-08 60.8 50 48.0
Manes.17G055500 Manihot esculenta HOM05D000262 ORTHO05D000300 3.9e-08 60.8 50 52.0
Actinidia35576 Actinidia chinensis HOM05D000262 ORTHO05D000300 5.1e-08 60.5 50 48.0
CSS0009172 Camellia sinensis var. sinensis HOM05D000262 ORTHO05D000300 5.1e-08 60.5 47 53.2
Lj3g0018098 Lotus japonicus HOM05D000262 ORTHO05D000300 5.1e-08 60.5 50 54.0
Solyc02g076880.4 Solanum lycopersicum HOM05D000262 ORTHO05D000300 5.1e-08 60.5 50 50.0
Solyc07g055010.3 Solanum lycopersicum HOM05D000262 ORTHO05D000300 5.1e-08 60.5 50 54.0
Sopen02g021780 Solanum pennellii HOM05D000262 ORTHO05D000300 5.1e-08 60.5 50 50.0
Sopen07g027200 Solanum pennellii HOM05D000262 ORTHO05D000300 5.1e-08 60.5 50 54.0
arahy.Tifrunner.gnm1.ann1.E9F55J Arachis hypogaea HOM05D000262 ORTHO05D000300 6.6e-08 60.1 50 50.0
Rhsim13G0190000 Rhododendron simsii HOM05D000262 ORTHO05D000300 6.6e-08 60.1 51 49.0
GSVIVG01021208001 Vitis vinifera HOM05D000262 ORTHO05D000300 6.6e-08 60.1 47 51.1
Glyma.12G210500 Glycine max HOM05D000262 ORTHO05D000300 8.6e-08 59.7 50 52.0
Glyma.13G290800 Glycine max HOM05D000262 ORTHO05D000300 8.6e-08 59.7 50 52.0
Lalb_Chr14g0367461 Lupinus albus HOM05D000262 ORTHO05D000300 8.6e-08 59.7 48 56.2
Prupe.3G118600 Prunus persica HOM05D000262 ORTHO05D000300 8.6e-08 59.7 48 52.1
Sabra11G0047400 Salix brachista HOM05D000262 ORTHO05D000300 8.6e-08 59.7 52 48.1
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 8.6e-08 59.7 51 49.0
TAR627G0049 Trochodendron aralioides HOM05D000262 ORTHO05D000300 8.6e-08 59.7 50 48.0
CSS0033339 Camellia sinensis var. sinensis HOM05D000262 ORTHO05D000300 1.1e-07 59.3 47 51.1
CAN.G456.13 Capsicum annuum HOM05D000262 ORTHO05D000300 1.1e-07 59.3 50 52.0
CARHR028410 Cardamine hirsuta HOM05D000262 ORTHO05D000300 1.1e-07 59.3 50 52.0
Medtr2g091235 Medicago truncatula HOM05D000262 ORTHO05D000300 1.5e-07 58.9 50 50.0
Nn1g09133 Nelumbo nucifera HOM05D000262 ORTHO05D000300 1.5e-07 58.9 50 48.0
Nitab4.5_0003691g0070 Nicotiana tabacum HOM05D000262 ORTHO05D000300 1.5e-07 58.9 50 50.0
Nitab4.5_0004426g0010 Nicotiana tabacum HOM05D000262 ORTHO05D000300 1.5e-07 58.9 50 50.0
Potri.004G056800 Populus trichocarpa HOM05D000262 ORTHO05D000300 1.5e-07 58.9 50 48.0
Potri.011G065600 Populus trichocarpa HOM05D000262 ORTHO05D000300 1.5e-07 58.9 47 51.1
RcHm_v2.0_Chr2g0129621 Rosa chinensis HOM05D000262 ORTHO05D000300 1.5e-07 58.9 48 52.1
Cpa.g.sc52.169 Carica papaya HOM05D000262 ORTHO05D000300 1.9e-07 58.5 47 53.2
PSO500G0008 Papaver somniferum HOM05D000262 ORTHO05D000300 1.9e-07 58.5 50 46.0
PSO675G2640 Papaver somniferum HOM05D000262 ORTHO05D000300 1.9e-07 58.5 50 46.0
Phvul.005G095400 Phaseolus vulgaris HOM05D000262 ORTHO05D000300 1.9e-07 58.5 50 50.0
Haze_13360 Corylus avellana HOM05D000262 ORTHO05D000300 2.5e-07 58.2 50 50.0
ECA234G4237 Erigeron canadensis HOM05D000262 ORTHO05D000300 2.5e-07 58.2 53 47.2
Eucgr.K01126 Eucalyptus grandis HOM05D000262 ORTHO05D000300 2.5e-07 58.2 50 50.0
Lj4g0026381 Lotus japonicus HOM05D000262 ORTHO05D000300 2.5e-07 58.2 50 50.0
Manes.15G048400 Manihot esculenta HOM05D000262 ORTHO05D000300 2.5e-07 58.2 48 54.2
Peaxi162Scf00469g00220 Petunia axillaris HOM05D000262 ORTHO05D000300 2.5e-07 58.2 50 50.0
Psat0s1858g0240 Pisum sativum HOM05D000262 ORTHO05D000300 2.5e-07 58.2 53 45.3
Thecc.09G300400 Theobroma cacao HOM05D000262 ORTHO05D000300 2.5e-07 58.2 50 50.0
Atru.chr6.1928 Acer truncatum HOM05D000262 ORTHO05D000300 3.3e-07 57.8 50 48.0
CANSAT35G0811 Cannabis sativa HOM05D000262 ORTHO05D000300 3.3e-07 57.8 48 52.1
CAN.G370.70 Capsicum annuum HOM05D000262 ORTHO05D000300 3.3e-07 57.8 47 53.2
Migut.M01041 Erythranthe guttata HOM05D000262 ORTHO05D000300 3.3e-07 57.8 53 49.1
Potri.019G106500 Populus trichocarpa HOM05D000262 ORTHO05D000300 3.3e-07 57.8 50 48.0
vmacro03927 Vaccinium macrocarpon HOM05D000262 ORTHO05D000300 3.3e-07 57.8 50 44.0
CiPaw.10G058600 Carya illinoinensis HOM05D000262 ORTHO05D000300 4.3e-07 57.4 45 53.3
QL05p046973 Quercus lobata HOM05D000262 ORTHO05D000300 4.3e-07 57.4 45 55.6
ATR0602G218 Amborella trichopoda HOM05D000262 ORTHO05D000300 5.6e-07 57.0 47 48.9
Cc02_g14880 Coffea canephora HOM05D000262 ORTHO05D000300 5.6e-07 57.0 47 51.1
MD09G1238100 Malus domestica HOM05D000262 ORTHO05D000300 5.6e-07 57.0 48 50.0
Potri.019G107500 Populus trichocarpa HOM05D000262 ORTHO05D000300 7.3e-07 56.6 50 46.0
VMungo1080G0166 Vigna mungo HOM05D000262 ORTHO05D000300 7.3e-07 56.6 50 48.0
Atru.chr6.2797 Acer truncatum HOM05D000262 ORTHO05D000300 9.5e-07 56.2 53 47.2
Actinidia11152 Actinidia chinensis HOM05D000262 ORTHO05D000300 9.5e-07 56.2 47 51.1
Hma1.2p1_1591F.1_g292510 Hydrangea macrophylla HOM05D000262 ORTHO05D000300 9.5e-07 56.2 47 51.1
TAR626G1172 Trochodendron aralioides HOM05D000262 ORTHO05D000300 9.5e-07 56.2 47 48.9
Hma1.2p1_0215F.1_g090830 Hydrangea macrophylla HOM05D000262 ORTHO05D000300 1.2e-06 55.8 46 52.2
Sed0008077 Sechium edule HOM05D000262 ORTHO05D000300 1.2e-06 55.8 48 52.1
THA.LOC104800848 Tarenaya hassleriana HOM05D000262 ORTHO05D000300 1.2e-06 55.8 50 52.0
CiPaw.09G069400 Carya illinoinensis HOM05D000262 ORTHO05D000300 1.6e-06 55.5 50 46.0
DCAR_023509 Daucus carota HOM05D000262 ORTHO05D000300 1.6e-06 55.5 45 51.1
HanXRQChr16g0518841 Helianthus annuus HOM05D000262 ORTHO05D000300 2.1e-06 55.1 54 40.7
TWI59G0712 Tripterygium wilfordii HOM05D000262 ORTHO05D000300 2.1e-06 55.1 47 48.9
Eucgr.E02745 Eucalyptus grandis HOM05D000262 ORTHO05D000300 2.8e-06 54.7 45 48.9
Lsat_1_v5_gn_7_101121 Lactuca sativa HOM05D000262 ORTHO05D000300 2.8e-06 54.7 50 44.0
PGR142G2146 Punica granatum HOM05D000262 ORTHO05D000300 3.6e-06 54.3 47 51.1
SGA_v2.0_scaffold1G00040 Striga asiatica HOM05D000262 ORTHO05D000300 3.6e-06 54.3 50 48.0
Ca_17926_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000300 4.7e-06 53.9 50 44.0
Lsat_1_v5_gn_4_49600 Lactuca sativa HOM05D000262 ORTHO05D000300 4.7e-06 53.9 48 50.0
Prupe.4G060800 Prunus persica HOM05D000262 ORTHO05D000300 4.7e-06 53.9 50 46.0
MD10G1280500 Malus domestica HOM05D000262 ORTHO05D000300 8.1e-06 53.1 50 46.0
Oeu042935.1 Olea europaea HOM05D000262 ORTHO05D000300 8.1e-06 53.1 47 46.8


User provided reference genes

Program Settings