Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 1.9e-186 655.6 306 100.0
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 1.1e-146 523.5 339 74.0
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 1.4e-144 516.5 339 72.9
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 8.8e-144 513.8 341 73.3
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 4.8e-142 508.1 341 72.4
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 1.2e-124 450.3 318 64.2
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 2.0e-124 449.5 318 63.8
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 5.9e-124 448.0 318 64.8
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.7e-123 446.4 318 64.2
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 1.7e-123 446.4 326 61.3
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 2.9e-123 445.7 318 64.2
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 2.9e-123 445.7 318 64.5
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 3.8e-123 445.3 318 63.2
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 3.8e-123 445.3 318 64.5
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 5.0e-123 444.9 318 64.2
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 5.0e-123 444.9 318 64.2
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 6.6e-123 444.5 318 63.5
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.1e-122 443.7 321 63.2
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 1.5e-122 443.4 320 62.5
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 3.3e-122 442.2 323 62.5
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 4.3e-122 441.8 318 63.2
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 4.3e-122 441.8 318 63.8
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 4.3e-122 441.8 318 61.9
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 9.5e-122 440.7 317 64.4
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 2.1e-121 439.5 318 62.9
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 2.8e-121 439.1 318 61.6
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 3.6e-121 438.7 318 62.3
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 3.6e-121 438.7 313 62.9
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 6.1e-121 438.0 320 62.5
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 6.1e-121 438.0 318 61.3
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 8.0e-121 437.6 319 62.1
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 2.3e-120 436.0 318 60.7
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 2.3e-120 436.0 318 61.3
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 6.8e-120 434.5 304 64.1
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 6.8e-120 434.5 319 63.6
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 6.8e-120 434.5 318 63.8
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 1.2e-119 433.7 319 63.3
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 2.0e-119 433.0 318 61.3
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 4.4e-119 431.8 319 61.4
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 5.8e-119 431.4 304 62.8
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 7.5e-119 431.0 324 60.2
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 2.9e-118 429.1 319 60.5
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 2.9e-118 429.1 309 62.5
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 2.9e-118 429.1 309 61.8
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 2.9e-118 429.1 321 59.8
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 3.7e-118 428.7 319 60.2
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 4.9e-118 428.3 318 61.9
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 6.4e-118 427.9 318 61.9
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 6.4e-118 427.9 319 60.8
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 6.4e-118 427.9 319 60.8
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 8.3e-118 427.6 318 61.6
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 8.3e-118 427.6 318 61.6
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 2.4e-117 426.0 320 60.6
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 2.4e-117 426.0 307 62.2
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 3.2e-117 425.6 305 63.0
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 3.2e-117 425.6 320 60.6
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 4.1e-117 425.2 319 62.4
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.1e-117 425.2 317 60.6
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 5.4e-117 424.9 319 60.2
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 5.4e-117 424.9 318 61.0
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.4e-117 424.9 319 59.6
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 5.4e-117 424.9 320 59.1
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 7.0e-117 424.5 318 60.7
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 9.2e-117 424.1 306 62.7
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 9.2e-117 424.1 318 60.7
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 9.2e-117 424.1 318 60.7
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 9.2e-117 424.1 318 60.4
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 9.2e-117 424.1 305 63.9
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 1.2e-116 423.7 318 61.3
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.6e-116 423.3 311 61.4
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 3.5e-116 422.2 315 61.0
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.5e-116 422.2 315 60.3
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.0e-116 421.4 306 61.4
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.7e-115 419.9 318 60.4
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.0e-115 419.1 319 61.8
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.9e-115 418.7 315 60.6
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 3.9e-115 418.7 320 60.9
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 6.6e-115 417.9 314 59.6
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 1.1e-114 417.2 306 61.4
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.5e-114 416.8 310 63.2
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.5e-114 416.8 320 60.9
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 2.5e-114 416.0 320 59.1
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 2.5e-114 416.0 320 59.4
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 2.5e-114 416.0 308 62.7
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 3.3e-114 415.6 305 62.6
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 3.3e-114 415.6 318 58.8
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.3e-114 415.2 320 57.8
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 7.3e-114 414.5 313 61.0
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.2e-113 413.7 304 61.2
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 1.2e-113 413.7 319 59.6
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 2.8e-113 412.5 320 58.8
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 6.2e-113 411.4 306 62.1
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 6.2e-113 411.4 310 62.3
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.2e-112 408.3 309 58.3
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 5.2e-112 408.3 299 60.9
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.5e-111 406.8 320 57.2
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 2.0e-111 406.4 305 59.0
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.4e-111 405.2 311 58.2
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 5.8e-111 404.8 318 58.2
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 7.5e-111 404.4 302 60.9
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 7.5e-111 404.4 302 60.9
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 7.5e-111 404.4 303 58.7
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 2.2e-110 402.9 318 58.5
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 2.9e-110 402.5 303 60.4
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.9e-110 402.5 307 59.3
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 2.9e-110 402.5 310 57.4
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 3.7e-110 402.1 303 61.1
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 6.4e-110 401.4 303 61.1
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.4e-109 399.4 318 58.2
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 4.1e-109 398.7 303 60.4
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 4.1e-109 398.7 318 55.0
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 9.2e-109 397.5 302 59.9
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 2.1e-108 396.4 302 59.6
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 2.7e-108 396.0 290 61.4
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.3e-107 393.7 301 59.1
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 3.0e-107 392.5 302 58.9
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.0e-107 392.5 301 59.1
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 3.9e-107 392.1 302 59.3
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 3.9e-107 392.1 302 58.6
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.1e-107 391.7 297 57.6
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 4.3e-106 388.7 318 54.1
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 5.6e-106 388.3 301 58.1
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 4.4e-103 378.6 322 55.3
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 9.9e-103 377.5 286 59.4
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 3.7e-102 375.6 303 57.8
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 3.2e-101 372.5 310 54.5
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 4.1e-101 372.1 316 56.0
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 1.5e-98 363.6 274 59.9
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.3e-98 362.5 321 51.7
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 2.1e-97 359.8 316 54.1
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.6e-97 359.0 278 59.4
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.4e-96 357.1 283 58.0
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.6e-92 343.6 318 49.7
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 1.0e-91 340.9 313 50.8
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 2.5e-90 336.3 293 53.2
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.3e-90 335.9 296 53.7
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 3.3e-90 335.9 296 53.7
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.3e-83 313.9 305 49.8
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 6.2e-81 305.1 298 52.3
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 1.1e-74 284.3 223 57.4
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.9e-74 283.5 216 58.3
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 1.3e-73 280.8 311 44.1
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.5e-69 265.4 275 47.6
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.8e-64 250.4 255 49.8
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 4.6e-52 209.1 180 55.6
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.7e-46 190.7 257 38.5
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 3.8e-46 189.5 126 64.3
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.7e-43 178.7 113 69.0
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 7.4e-42 175.3 111 72.1
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.1e-37 161.4 323 32.2
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 2.2e-33 147.1 351 30.5
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.4e-26 123.2 98 55.1
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 1.7e-25 120.9 336 28.3
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 1.2e-23 114.8 234 34.6
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 9.5e-13 78.6 59 61.0
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 1.1e-08 65.1 56 50.0


User provided reference genes

Program Settings