Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.9e-80 302.4 146 100.0
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.5e-56 223.0 146 78.1
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 5.3e-54 214.5 150 73.3
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 5.3e-54 214.5 147 76.2
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 5.7e-32 141.4 149 51.7
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 6.3e-31 137.9 150 50.7
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.5e-29 133.3 146 50.7
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.0e-29 132.9 146 50.0
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 2.6e-29 132.5 149 50.3
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 3.4e-29 132.1 155 47.7
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 3.4e-29 132.1 158 50.6
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.3e-28 130.2 146 50.0
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.7e-28 129.8 149 49.0
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.2e-28 129.4 151 49.0
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.2e-28 129.4 151 49.0
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 2.9e-28 129.0 147 53.1
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.9e-27 126.3 143 49.7
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 2.5e-27 125.9 148 48.0
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 2.5e-27 125.9 150 48.0
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 7.2e-27 124.4 148 49.3
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 2.1e-26 122.9 148 44.6
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 2.7e-26 122.5 148 44.6
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 3.6e-26 122.1 153 47.7
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 6.1e-26 121.3 140 51.4
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 7.9e-26 120.9 146 43.2
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 1.0e-25 120.6 147 46.3
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 1.0e-25 120.6 149 43.0
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 1.4e-25 120.2 126 52.4
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.4e-25 120.2 142 45.1
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 1.4e-25 120.2 152 43.4
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.8e-25 119.8 128 48.4
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.8e-25 119.8 128 48.4
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 1.8e-25 119.8 130 52.3
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.3e-25 119.4 144 45.8
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.3e-25 119.4 127 50.4
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 2.3e-25 119.4 118 55.9
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 3.0e-25 119.0 131 50.4
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.9e-25 118.6 146 44.5
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 3.9e-25 118.6 149 45.6
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 5.1e-25 118.2 127 49.6
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 6.7e-25 117.9 145 46.2
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 6.7e-25 117.9 153 45.8
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.0e-24 116.3 146 45.2
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.0e-24 116.3 146 45.2
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 2.0e-24 116.3 147 44.9
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 2.6e-24 115.9 148 46.6
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 3.3e-24 115.5 155 47.7
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 5.7e-24 114.8 146 44.5
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 7.4e-24 114.4 153 41.8
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 7.4e-24 114.4 124 50.8
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 7.4e-24 114.4 151 41.1
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 9.7e-24 114.0 151 47.7
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 1.3e-23 113.6 147 42.9
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 4.8e-23 111.7 124 46.0
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 6.3e-23 111.3 149 40.3
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.1e-22 110.5 124 45.2
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 4.1e-22 108.6 139 45.3
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 4.1e-22 108.6 158 42.4
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 4.1e-22 108.6 143 47.6
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 7.0e-22 107.8 133 47.4
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 7.0e-22 107.8 133 47.4
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 7.0e-22 107.8 127 45.7
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 7.0e-22 107.8 142 45.1
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 7.0e-22 107.8 142 45.1
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 1.2e-21 107.1 150 44.0
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 1.2e-21 107.1 119 48.7
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 1.5e-21 106.7 148 45.3
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 1.5e-21 106.7 146 44.5
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 2.0e-21 106.3 124 47.6
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 2.0e-21 106.3 124 46.0
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 2.6e-21 105.9 140 44.3
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.5e-21 105.1 150 40.7
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.5e-21 105.1 117 48.7
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.5e-21 105.1 117 48.7
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 2.2e-20 102.8 124 45.2
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.9e-20 102.4 120 48.3
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 5.0e-20 101.7 142 43.7
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 5.0e-20 101.7 150 41.3
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 5.0e-20 101.7 124 45.2
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 6.5e-20 101.3 126 45.2
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 1.4e-19 100.1 136 43.4
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.4e-19 100.1 124 44.4
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 2.5e-19 99.4 142 42.3
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 2.5e-19 99.4 118 49.2
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.2e-19 99.0 120 48.3
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.2e-19 99.0 116 47.4
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 7.2e-19 97.8 124 49.2
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 9.4e-19 97.4 123 45.5
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.2e-18 97.1 151 42.4
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 2.1e-18 96.3 136 40.4
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 2.1e-18 96.3 124 46.0
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.7e-18 95.9 132 43.9
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 4.7e-18 95.1 136 44.1
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 4.7e-18 95.1 120 47.5
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 6.1e-18 94.7 117 46.2
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 8.0e-18 94.4 117 46.2
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 1.4e-17 93.6 136 41.2
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.4e-17 93.6 133 42.1
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 1.8e-17 93.2 145 42.1
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 1.8e-17 93.2 124 44.4
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 2.3e-17 92.8 125 41.6
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 5.2e-17 91.7 120 47.5
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 6.7e-17 91.3 124 44.4
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 6.7e-17 91.3 151 38.4
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 6.7e-17 91.3 135 42.2
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 6.7e-17 91.3 128 42.2
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.1e-16 90.5 146 39.7
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.5e-16 90.1 133 42.1
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 3.3e-16 89.0 124 42.7
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 7.4e-16 87.8 145 36.6
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 9.7e-16 87.4 115 44.3
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.3e-15 87.0 124 39.5
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.3e-15 87.0 124 39.5
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 1.7e-15 86.7 124 39.5
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 2.2e-15 86.3 123 42.3
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.8e-15 85.9 142 34.5
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.8e-15 85.9 139 41.7
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 4.8e-15 85.1 124 38.7
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 4.8e-15 85.1 103 43.7
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 8.2e-15 84.3 142 34.5
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 8.2e-15 84.3 116 40.5
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.4e-14 83.6 135 40.0
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.8e-14 83.2 128 43.8
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 4.1e-14 82.0 137 38.0
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 4.1e-14 82.0 51 68.6
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 4.1e-14 82.0 138 38.4
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.3e-14 81.6 124 37.1
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.6e-13 80.1 103 47.6
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 1.6e-13 80.1 138 41.3
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 2.6e-13 79.3 119 39.5
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 4.5e-13 78.6 137 36.5
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 4.5e-13 78.6 52 69.2
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.0e-12 77.4 150 39.3
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.3e-12 77.0 119 37.8
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 2.9e-12 75.9 133 39.1
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.8e-12 75.5 50 68.0
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 5.0e-12 75.1 105 44.8
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 5.0e-12 75.1 105 44.8
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.1e-11 73.9 61 57.4
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.1e-11 73.9 127 36.2
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 1.5e-11 73.6 124 36.3
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.5e-11 73.6 131 34.4
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.9e-11 73.2 115 40.9
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.9e-11 73.2 111 45.0
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.9e-11 73.2 132 36.4
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 2.5e-11 72.8 97 42.3
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.2e-11 72.4 116 37.1
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 9.4e-11 70.9 115 36.5
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.6e-10 70.1 115 35.7
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 1.6e-10 70.1 107 43.9
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.1e-10 69.7 124 32.3
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.6e-10 68.9 127 33.9
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.7e-10 68.6 156 29.5
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 6.1e-10 68.2 40 72.5
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.0e-09 67.4 118 36.4
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.0e-09 67.4 115 39.1
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 1.0e-09 67.4 136 33.1
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.0e-09 67.4 51 60.8
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 4.0e-09 65.5 144 34.7
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.5e-08 63.5 50 60.0
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.5e-08 63.5 127 32.3
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-08 62.8 124 31.5
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 2.6e-08 62.8 112 38.4
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.3e-08 62.4 130 27.7
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 1.7e-07 60.1 118 34.7
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.8e-07 59.3 123 30.9
Sc26g0003380 Simmondsia chinensis HOM05D004108 ORTHO05D004849 4.8e-07 58.5 76 48.7
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 8.2e-07 57.8 103 39.8
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-06 57.4 123 32.5
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 1.8e-06 56.6 92 34.8
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 4.1e-06 55.5 111 30.6
Prupe.2G019400 Prunus persica HOM05D004108 ORTHO05D004849 4.1e-06 55.5 41 63.4
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 5.3e-06 55.1 140 29.3


User provided reference genes

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