Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 1.2e-232 809.7 461 100.0
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.3e-210 736.5 462 92.4
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.6e-210 736.1 462 91.8
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 9.0e-209 730.3 462 92.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 8.5e-183 644.0 462 80.5
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 7.2e-182 641.0 462 79.7
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.6e-181 639.8 462 79.7
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.0e-180 637.1 462 79.9
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 2.6e-179 632.5 462 79.7
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.8e-178 629.0 462 76.8
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 1.1e-177 627.1 462 78.6
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.1e-177 627.1 462 79.2
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 1.8e-177 626.3 462 79.7
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.0e-176 622.9 462 78.6
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.0e-176 622.9 459 76.7
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.7e-176 622.5 462 78.4
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.3e-175 620.2 464 77.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.7e-175 619.8 459 76.3
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 1.7e-175 619.8 461 79.2
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 2.9e-175 619.0 461 77.4
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 2.9e-175 619.0 459 76.0
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 3.8e-175 618.6 462 79.2
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 6.5e-175 617.8 458 77.9
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.1e-174 617.1 463 77.3
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.9e-174 616.3 460 79.3
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 3.2e-174 615.5 459 77.1
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.2e-173 613.6 465 78.1
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.2e-173 613.6 459 76.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.6e-173 613.2 460 78.9
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.0e-172 610.5 459 78.4
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.0e-172 610.5 462 76.2
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.4e-172 610.1 459 78.2
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 4.0e-172 608.6 462 77.5
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 6.8e-172 607.8 459 77.3
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 8.8e-172 607.4 460 77.0
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.0e-171 606.3 464 70.3
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 9.8e-171 604.0 462 75.8
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.7e-170 603.2 462 75.8
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 6.3e-170 601.3 462 75.3
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 6.3e-170 601.3 460 77.6
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 8.3e-170 600.9 459 77.1
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.1e-169 600.5 463 74.1
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.1e-169 600.5 441 81.0
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 1.4e-169 600.1 463 76.7
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.4e-169 600.1 459 76.9
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.4e-169 600.1 462 75.3
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 2.7e-168 595.9 462 74.7
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 3.5e-168 595.5 462 76.4
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 5.9e-168 594.7 454 76.0
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 7.7e-168 594.3 462 75.5
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.7e-168 594.3 464 75.9
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.0e-167 594.0 462 74.5
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.9e-167 592.4 464 76.1
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.9e-167 592.4 466 74.0
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.8e-167 592.0 461 74.6
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 6.5e-167 591.3 462 75.8
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.5e-166 589.3 462 75.5
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 3.2e-166 589.0 504 65.3
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 4.2e-166 588.6 460 75.0
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 4.2e-166 588.6 460 75.9
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 2.1e-165 586.3 462 74.2
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.7e-165 585.9 462 74.2
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.4e-164 583.6 483 71.4
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 5.2e-164 581.6 462 73.8
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 8.8e-164 580.9 460 73.0
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 1.2e-163 580.5 459 74.9
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 2.0e-163 579.7 462 74.0
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 3.7e-162 575.5 459 66.9
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 3.7e-162 575.5 459 66.9
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.8e-161 573.2 459 73.2
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 2.4e-161 572.8 462 72.9
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.6e-160 570.1 476 71.8
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 2.7e-160 569.3 460 73.5
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.5e-160 568.9 460 73.5
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 4.5e-160 568.5 459 71.9
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 4.5e-160 568.5 462 70.8
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.0e-156 555.8 551 64.4
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.2e-154 549.7 462 72.3
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 6.4e-154 548.1 461 70.1
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 6.4e-154 548.1 493 68.0
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 9.2e-153 544.3 465 63.4
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 2.7e-152 542.7 456 71.7
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 4.6e-152 542.0 463 69.1
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 6.6e-151 538.1 456 71.3
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 6.6e-151 538.1 456 71.3
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.1e-150 537.3 460 69.6
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.5e-150 537.0 462 69.0
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.9e-150 536.6 456 70.6
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 3.3e-150 535.8 462 69.0
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 8.0e-149 531.2 465 68.8
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 8.0e-149 531.2 462 69.3
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 2.6e-147 526.2 387 69.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 2.6e-147 526.2 462 62.8
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.3e-146 523.9 462 68.4
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 2.2e-146 523.1 462 68.2
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.2e-146 523.1 388 69.8
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.2e-146 523.1 462 68.6
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.7e-146 522.3 387 70.0
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 3.9e-143 512.3 388 68.8
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.0e-143 511.9 462 66.7
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 4.3e-142 508.8 388 68.6
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.6e-141 506.9 460 67.6
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 4.0e-140 502.3 463 59.8
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.0e-139 500.0 459 64.9
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 4.4e-139 498.8 382 78.0
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.0e-135 486.1 459 64.1
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.7e-130 470.3 496 61.9
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.2e-128 464.2 461 64.6
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 2.7e-128 463.0 465 61.5
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 7.8e-128 461.5 463 62.0
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.7e-127 460.3 384 72.7
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 5.1e-127 458.8 462 57.4
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 7.1e-113 411.8 463 56.6
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 2.7e-112 409.8 364 62.9
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.8e-111 407.1 465 52.9
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.0e-99 367.1 300 64.3
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 5.8e-99 365.5 462 49.8
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.5e-86 324.3 314 59.9
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 2.5e-73 280.4 290 65.9
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 4.7e-64 249.6 389 39.3
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.4e-63 248.1 407 37.6
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.8e-60 237.7 241 52.3
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 3.0e-55 220.3 187 65.8
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 2.4e-52 210.7 512 39.3
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 5.4e-44 183.0 396 32.3
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.7e-42 177.9 120 75.8
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.8e-42 176.8 151 62.3
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.3e-41 173.7 123 69.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 2.0e-38 164.5 504 34.7
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 2.9e-37 160.6 121 72.7
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 6.4e-37 159.5 134 64.9
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.3e-29 132.5 156 53.8
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 1.5e-22 111.7 91 64.8
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.5e-22 111.7 101 93.1
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.4e-22 110.2 204 39.7
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 2.1e-19 101.3 68 76.5
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.1e-18 96.7 55 90.9
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 5.8e-14 83.2 107 48.6
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 5.4e-12 76.6 107 45.8
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.0e-10 72.4 60 61.7
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.0e-10 72.4 97 49.5
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 5.6e-09 66.6 47 70.2
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 7.3e-09 66.2 61 57.4
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 1.2e-08 65.5 61 55.7
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.6e-08 65.1 104 42.3
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 2.1e-08 64.7 67 49.3
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 2.8e-08 64.3 49 75.5
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 4.7e-08 63.5 55 65.5
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 2.4e-07 61.2 234 26.5
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 4.0e-07 60.5 405 21.5
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 5.2e-07 60.1 405 20.5
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 5.2e-07 60.1 405 20.5
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 6.9e-07 59.7 407 21.6
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 9.0e-07 59.3 257 24.9
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 2.0e-06 58.2 234 26.1
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 3.4e-06 57.4 220 24.1
MELO3C035393.2 Cucumis melo HOM05D008781 ORTHO05D013374 5.8e-06 56.6 47 66.0
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 7.6e-06 56.2 404 20.8
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 9.9e-06 55.8 226 23.9


User provided reference genes

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