Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024146 Sechium edule HOM05D008113 ORTHO05D009793 7.8e-92 340.5 178 100.0
Sed0025759 Sechium edule HOM05D008113 ORTHO05D009793 9.6e-66 253.8 163 81.0
CsaV3_3G049170 Cucumis sativus L. HOM05D008113 ORTHO05D009793 5.3e-56 221.5 174 71.8
MELO3C003410.2 Cucumis melo HOM05D008113 ORTHO05D009793 1.5e-55 219.9 174 71.8
Prupe.5G036500 Prunus persica HOM05D008113 ORTHO05D009793 6.9e-24 114.8 169 42.0
RcHm_v2.0_Chr7g0209731 Rosa chinensis HOM05D008113 ORTHO05D009793 3.4e-23 112.5 163 42.9
Thecc.03G227800 Theobroma cacao HOM05D008113 ORTHO05D009793 6.5e-22 108.2 174 44.8
Duzib205G0546 Durio zibethinus HOM05D008113 ORTHO05D009793 1.4e-21 107.1 145 47.6
FAN08G1006 Fragaria x ananassa HOM05D008113 ORTHO05D009793 2.5e-21 106.3 164 43.3
COL.COLO4_17032 Corchorus olitorius HOM05D008113 ORTHO05D009793 5.5e-21 105.1 176 43.8
FAN04G2725 Fragaria x ananassa HOM05D008113 ORTHO05D009793 5.5e-21 105.1 164 42.7
Cfa012440 Carpinus fangiana HOM05D008113 ORTHO05D009793 3.6e-20 102.4 175 41.7
Manes.17G015710 Manihot esculenta HOM05D008113 ORTHO05D009793 6.1e-20 101.7 173 38.7
Atru.chr6.1709 Acer truncatum HOM05D008113 ORTHO05D009793 1.4e-19 100.5 175 41.7
FvH4_5g22080 Fragaria vesca HOM05D008113 ORTHO05D009793 3.0e-19 99.4 153 43.8
QL12p005179 Quercus lobata HOM05D008113 ORTHO05D009793 3.9e-19 99.0 175 42.3
Gorai.003G181900 Gossypium raimondii HOM05D008113 ORTHO05D009793 6.7e-19 98.2 144 47.2
Gohir.D03G171300 Gossypium hirsutum HOM05D008113 ORTHO05D009793 8.8e-19 97.8 144 47.2
Dinv28958 Davidia involucrata HOM05D008113 ORTHO05D009793 2.0e-18 96.7 176 38.1
Sabra01G0111000 Salix brachista HOM05D008113 ORTHO05D009793 2.0e-18 96.7 174 40.2
VMungo1215G1592 Vigna mungo HOM05D008113 ORTHO05D009793 7.4e-18 94.7 174 39.1
Phvul.002G141700 Phaseolus vulgaris HOM05D008113 ORTHO05D009793 1.3e-17 94.0 173 39.3
Gohir.A03G000900 Gossypium hirsutum HOM05D008113 ORTHO05D009793 1.7e-17 93.6 144 46.5
CSS0012952 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 3.7e-17 92.4 174 39.1
CSS0027769 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 3.7e-17 92.4 174 39.1
Ciclev10012946m.g Citrus clementina HOM05D008113 ORTHO05D009793 6.3e-17 91.7 174 40.2
DCAR_008271 Daucus carota HOM05D008113 ORTHO05D009793 1.1e-16 90.9 164 40.2
TWI60G1148 Tripterygium wilfordii HOM05D008113 ORTHO05D009793 1.8e-16 90.1 154 42.2
Potri.001G142300 Populus trichocarpa HOM05D008113 ORTHO05D009793 2.4e-16 89.7 174 39.7
Actinidia09200 Actinidia chinensis HOM05D008113 ORTHO05D009793 4.1e-16 89.0 178 38.2
CiPaw.11G093400 Carya illinoinensis HOM05D008113 ORTHO05D009793 4.1e-16 89.0 173 37.0
Haze_08228 Corylus avellana HOM05D008113 ORTHO05D009793 9.1e-16 87.8 147 42.9
CSS0025106 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 2.0e-15 86.7 163 36.8
Glyma.09G204200 Glycine max HOM05D008113 ORTHO05D009793 5.9e-15 85.1 177 37.3
Psat2g135920 Pisum sativum HOM05D008113 ORTHO05D009793 7.7e-15 84.7 175 36.6
Medtr5g030480 Medicago truncatula HOM05D008113 ORTHO05D009793 1.9e-13 80.1 174 36.8
Rhsim07G0126900 Rhododendron simsii HOM05D008113 ORTHO05D009793 1.9e-13 80.1 172 39.5
Aqoxy3G02349 Aquilegia oxysepala HOM05D008113 ORTHO05D009793 4.2e-13 79.0 151 38.4
Ca_06079_v3 Cicer arietinum L. HOM05D008113 ORTHO05D009793 1.2e-12 77.4 174 36.2
Rhsim07G0125800 Rhododendron simsii HOM05D008113 ORTHO05D009793 1.2e-12 77.4 166 38.6
Sc22g0001540 Simmondsia chinensis HOM05D008113 ORTHO05D009793 1.6e-12 77.0 147 36.7
Actinidia09205 Actinidia chinensis HOM05D008113 ORTHO05D009793 2.7e-12 76.3 126 42.9
Lj2g0011936 Lotus japonicus HOM05D008113 ORTHO05D009793 2.7e-12 76.3 177 35.0
MSTRG.1985 Avicennia marina HOM05D008113 ORTHO05D009793 6.1e-12 75.1 192 33.3
FAN18G0344 Fragaria x ananassa HOM05D008113 ORTHO05D009793 6.1e-12 75.1 105 47.6
Hma1.2p1_1063F.1_g253560 Hydrangea macrophylla HOM05D008113 ORTHO05D009793 1.4e-11 73.9 173 35.8
Nn1g08044 Nelumbo nucifera HOM05D008113 ORTHO05D009793 1.4e-11 73.9 154 37.0
Hma1.2p1_2704F.1_g327140 Hydrangea macrophylla HOM05D008113 ORTHO05D009793 2.3e-11 73.2 173 35.8
Glyma.01G018600 Glycine max HOM05D008113 ORTHO05D009793 1.5e-10 70.5 177 32.2
EL10Ac5g12119 Beta vulgaris HOM05D008113 ORTHO05D009793 2.0e-10 70.1 112 39.3
MBI04_g23600_MAGBIO Magnolia biondii HOM05D008113 ORTHO05D009793 3.3e-10 69.3 152 36.2
CANSAT21G0751 Cannabis sativa HOM05D008113 ORTHO05D009793 1.3e-09 67.4 161 35.4
CARHR032060 Cardamine hirsuta HOM05D012772 ORTHO05D009793 1.7e-09 67.0 95 48.4
Ah.12g055040 Amaranthus hybridus HOM05D008113 ORTHO05D009793 2.8e-09 66.2 145 34.5
MD06G1034200 Malus domestica HOM05D008113 ORTHO05D009793 7.0e-08 61.6 124 36.3
PSO063G7600 Papaver somniferum HOM05D008113 ORTHO05D009793 1.2e-07 60.8 174 32.2
unitig_22.g5500 Utricularia gibba HOM05D008113 ORTHO05D009793 1.2e-07 60.8 164 33.5
AUR62018715 Chenopodium quinoa HOM05D008113 ORTHO05D009793 1.6e-07 60.5 90 44.4
AUR62007292 Chenopodium quinoa HOM05D008113 ORTHO05D009793 2.0e-07 60.1 79 46.8
MD06G1034100 Malus domestica HOM05D008113 ORTHO05D009793 3.5e-07 59.3 154 35.1
PSO782G0685 Papaver somniferum HOM05D008113 ORTHO05D009793 4.5e-07 58.9 171 30.4
PGSC0003DMG400001153 Solanum tuberosum HOM05D023668 ORTHO05D009793 1.0e-06 57.8 194 29.9
SGA_v2.0_scaffold20G09258 Striga asiatica HOM05D008113 ORTHO05D009793 1.7e-06 57.0 170 31.2
ECA233G2707 Erigeron canadensis HOM05D008113 ORTHO05D009793 3.8e-06 55.8 73 46.6
THA.LOC104814445 Tarenaya hassleriana HOM05D008113 ORTHO05D009793 5.0e-06 55.5 110 41.8
Thhalv10009063m.g Eutrema salsugineum HOM05D012772 ORTHO05D009793 6.5e-06 55.1 91 41.8


User provided reference genes

Program Settings