Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.0e-81 306.6 146 100.0
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 3.1e-78 295.0 146 94.5
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 6.8e-78 293.9 146 94.5
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.5e-77 292.7 146 93.2
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 9.9e-77 290.0 146 91.8
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.0e-65 253.4 146 79.5
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.3e-65 253.1 146 79.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 3.9e-65 251.5 147 78.9
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 5.1e-65 251.1 146 80.1
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.9e-64 249.2 146 76.7
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 2.5e-64 248.8 147 78.2
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 2.5e-64 248.8 146 76.7
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 78.8
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 7.3e-64 247.3 142 78.9
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 74.7
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 76.7
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 76.7
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 78.1
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 78.1
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.1e-63 245.7 147 76.9
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 76.0
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.8e-63 245.4 146 74.0
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.6e-63 245.0 147 76.9
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 4.8e-63 244.6 147 76.9
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 74.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 73.3
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 73.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 74.0
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 75.3
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 76.7
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.4e-62 242.3 146 76.0
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 3.1e-62 241.9 144 76.4
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 3.1e-62 241.9 148 75.7
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 76.0
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 74.7
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 75.3
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 6.9e-62 240.7 150 78.7
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 6.9e-62 240.7 148 75.7
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 6.9e-62 240.7 147 72.8
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 9.0e-62 240.4 140 77.9
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 74.7
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 74.7
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 76.0
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.5e-61 239.6 147 75.5
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.5e-61 239.6 147 75.5
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.5e-61 239.6 147 75.5
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.5e-61 239.6 147 75.5
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.0
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.0
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.0
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 75.3
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 75.3
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 2.6e-61 238.8 148 75.7
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 74.7
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 76.2
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 76.2
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 74.7
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 76.0
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.8e-61 237.7 140 74.3
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.8e-61 237.7 148 75.7
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 9.9e-61 236.9 150 74.0
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.3e-60 236.5 148 75.7
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.7e-60 236.1 147 74.8
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.2e-60 235.7 146 74.0
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.9e-60 235.3 146 73.3
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.8e-60 235.0 147 75.5
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 6.4e-60 234.2 146 72.6
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 2.4e-59 232.3 144 72.9
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.4e-59 232.3 146 72.6
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.4e-59 232.3 148 73.0
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.2e-59 231.9 146 73.3
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 71.2
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 74.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 71.2
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.6e-58 229.6 133 78.9
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 72.6
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 71.9
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 2.7e-58 228.8 148 73.6
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.5e-58 228.4 133 78.2
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 3.5e-58 228.4 133 78.2
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 4.6e-58 228.0 146 71.2
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 6.0e-58 227.6 143 69.2
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 7.9e-58 227.3 146 69.9
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.3e-57 226.5 147 70.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.8e-57 226.1 149 71.8
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.8e-57 226.1 137 75.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.0e-57 225.3 148 70.3
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.0e-57 225.3 146 71.9
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 8.7e-57 223.8 132 77.3
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 8.7e-57 223.8 146 69.9
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 8.7e-57 223.8 146 69.9
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 8.7e-57 223.8 147 68.7
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.1e-56 223.4 147 70.7
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.5e-56 223.0 146 69.2
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 5.6e-56 221.1 149 69.1
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 7.4e-56 220.7 146 65.8
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 7.4e-56 220.7 147 70.1
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.4e-56 220.7 146 68.5
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 9.6e-56 220.3 146 65.8
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.8e-55 218.8 146 69.2
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.8e-55 218.8 149 69.1
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 4.8e-55 218.0 151 68.2
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 8.1e-55 217.2 146 64.4
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.1e-54 216.9 125 79.2
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.4e-54 216.5 146 65.1
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.4e-54 215.7 148 70.3
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.4e-54 215.7 147 71.4
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 3.1e-54 215.3 146 67.8
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 68.0
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 9.0e-54 213.8 146 63.7
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 2.0e-53 212.6 150 68.7
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 4.5e-53 211.5 147 68.0
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 4.5e-53 211.5 147 68.0
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 5.8e-53 211.1 147 66.0
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 5.8e-53 211.1 147 68.7
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 5.8e-53 211.1 147 68.7
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.8e-52 208.4 150 66.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.8e-52 208.4 150 66.0
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 4.9e-52 208.0 147 66.7
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 6.4e-52 207.6 131 68.7
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 8.4e-52 207.2 150 67.3
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.4e-51 206.5 146 65.8
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 3.2e-51 205.3 135 69.6
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 9.3e-51 203.8 130 74.6
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.6e-50 203.0 151 63.6
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 2.1e-50 202.6 150 66.0
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 6.0e-50 201.1 151 66.2
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 7.9e-50 200.7 123 71.5
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.0e-49 200.3 150 64.7
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.8e-49 199.5 146 59.6
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 6.7e-49 197.6 150 66.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 64.9
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 64.9
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 64.9
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.9e-48 196.1 113 76.1
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 4.8e-47 191.4 146 58.2
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 6.2e-47 191.0 134 67.2
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.1e-46 190.3 146 62.3
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.2e-45 186.8 146 61.0
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.3e-41 173.3 101 80.2
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 3.3e-40 168.7 146 62.3
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 8.2e-39 164.1 146 56.8
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.4e-38 162.5 146 58.2
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.7e-36 156.4 101 68.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 8.5e-36 154.1 97 76.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 2.3e-33 146.0 148 50.7
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 3.7e-31 138.7 122 54.1
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 2.7e-26 122.5 166 42.8
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.3e-23 111.3 127 50.4
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 4.5e-21 105.1 67 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 1.3e-20 103.6 103 47.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.5e-19 99.4 75 68.0
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 4.0e-09 65.5 91 35.2
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 2.6e-08 62.8 37 70.3
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 5.7e-08 61.6 76 35.5


User provided reference genes

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