Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024115 Sechium edule HOM05D004182 ORTHO05D007321 6.9e-23 109.8 55 100.0
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.7e-17 90.1 69 73.9
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.7e-17 90.1 69 73.9
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.7e-17 90.1 69 73.9
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.7e-17 90.1 69 73.9
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.7e-17 90.1 69 73.9
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.7e-17 90.1 69 73.9
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.7e-17 90.1 69 73.9
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 7.4e-17 89.7 69 72.5
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 1.6e-16 88.6 69 72.5
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 1.6e-16 88.6 69 72.5
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 1.6e-16 88.6 69 72.5
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 1.6e-16 88.6 69 72.5
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 1.6e-16 88.6 69 72.5
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 2.1e-16 88.2 68 72.1
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 2.8e-16 87.8 69 71.0
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 2.8e-16 87.8 69 72.5
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 2.8e-16 87.8 69 72.5
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 2.8e-16 87.8 68 72.1
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 2.8e-16 87.8 69 71.0
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 3.7e-16 87.4 68 70.6
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 3.7e-16 87.4 68 70.6
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 3.7e-16 87.4 68 70.6
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 4.8e-16 87.0 67 73.1
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 8.2e-16 86.3 69 69.6
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 1.1e-15 85.9 63 76.2
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 1.1e-15 85.9 68 69.1
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 1.1e-15 85.9 68 69.1
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 1.4e-15 85.5 69 68.1
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.4e-15 85.5 70 72.9
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 1.8e-15 85.1 69 69.6
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 2.4e-15 84.7 68 69.1
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 2.4e-15 84.7 68 69.1
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 2.4e-15 84.7 69 69.6
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 4.0e-15 84.0 68 69.1
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 5.3e-15 83.6 64 71.9
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 6.9e-15 83.2 66 72.7
Sed0012210 Sechium edule HOM05D004182 ORTHO05D007321 1.2e-14 82.4 57 78.9
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.5e-14 82.0 69 71.0
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 2.6e-14 81.3 68 66.2
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 2.6e-14 81.3 69 68.1
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 3.4e-14 80.9 68 67.6
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.5e-14 80.5 62 72.6
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.5e-14 80.5 62 72.6
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 5.8e-14 80.1 68 66.2
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 5.0e-13 77.0 68 61.8
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 8.4e-13 76.3 61 68.9
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 1.9e-12 75.1 67 64.2
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 3.2e-12 74.3 69 59.4
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 5.5e-12 73.6 67 62.7
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 9.3e-12 72.8 63 66.7
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 9.3e-12 72.8 63 68.3
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 1.2e-11 72.4 43 83.7
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 1.2e-11 72.4 43 83.7
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 1.6e-11 72.0 43 83.7
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 2.1e-11 71.6 40 87.5
PGSC0003DMG400027964 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.1e-11 71.6 40 90.0
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 2.7e-11 71.2 43 81.4
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.7e-11 71.2 39 89.7
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.7e-11 71.2 39 89.7
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 4.6e-11 70.5 63 69.8
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 6.1e-11 70.1 69 60.9
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 1.0e-10 69.3 36 91.7
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.0e-10 69.3 32 100.0
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.0e-10 69.3 43 81.4
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.3e-10 68.9 58 67.2
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 1.3e-10 68.9 68 58.8
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.8e-10 68.6 43 81.4
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.8e-10 68.6 43 81.4
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.8e-10 68.6 43 81.4
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.8e-10 68.6 43 81.4
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 1.8e-10 68.6 54 72.2
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 6.7e-10 66.6 68 57.4
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 1.5e-09 65.5 68 57.4
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 2.5e-09 64.7 69 58.0
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 2.5e-09 64.7 69 58.0
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 2.5e-09 64.7 69 58.0
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 2.5e-09 64.7 69 58.0
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 2.5e-09 64.7 58 63.8
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 3.3e-09 64.3 68 55.9
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 3.3e-09 64.3 70 57.1
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 3.3e-09 64.3 67 58.2
Phvul.010G035850 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 9.7e-09 62.8 32 90.6
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 1.3e-08 62.4 68 55.9
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 2.2e-08 61.6 65 55.4
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 3.7e-08 60.8 67 52.2
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 6.3e-08 60.1 53 64.2
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 4.1e-07 57.4 70 52.9
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 5.3e-07 57.0 55 60.0
ECA247G0006 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.0e-07 56.2 38 76.3
Cpa.g.sc76.14 Carica papaya HOM05D004182 ORTHO05D007321 2.0e-06 55.1 34 76.5


User provided reference genes

Program Settings