Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 5.6e-195 684.1 349 100.0
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 8.7e-180 633.6 340 93.5
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 5.6e-179 630.9 340 93.2
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 4.8e-178 627.9 340 92.4
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 3.0e-172 608.6 340 88.2
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 6.7e-172 607.4 340 88.8
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 6.7e-172 607.4 340 89.4
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 6.7e-172 607.4 340 89.4
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 2.5e-171 605.5 340 88.2
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 7.4e-171 604.0 340 87.9
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 1.3e-170 603.2 340 88.2
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.3e-170 603.2 340 87.9
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 2.1e-170 602.4 341 88.0
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 4.8e-170 601.3 340 87.4
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 6.3e-170 600.9 340 87.1
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 6.3e-170 600.9 340 87.1
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 6.3e-170 600.9 340 87.1
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 6.3e-170 600.9 340 87.1
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 8.2e-170 600.5 340 87.1
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.4e-169 599.7 340 87.1
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 1.4e-169 599.7 340 88.2
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 5.3e-169 597.8 340 87.6
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 6.9e-169 597.4 340 87.1
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 6.9e-169 597.4 340 87.1
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 6.9e-169 597.4 340 86.5
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 6.9e-169 597.4 340 87.6
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 6.9e-169 597.4 340 86.2
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.0e-169 597.0 339 87.3
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 1.2e-168 596.7 340 87.1
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.2e-168 596.7 339 87.3
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.2e-168 596.7 340 86.5
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 1.5e-168 596.3 340 87.1
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 3.4e-168 595.1 340 87.6
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.4e-168 595.1 339 87.3
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 3.4e-168 595.1 340 86.5
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 3.4e-168 595.1 340 86.2
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 4.5e-168 594.7 340 87.1
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 4.5e-168 594.7 340 86.8
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 4.5e-168 594.7 340 86.8
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 4.5e-168 594.7 340 86.5
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 7.6e-168 594.0 340 86.8
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 1.7e-167 592.8 340 85.9
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.8e-167 591.7 340 86.2
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 3.8e-167 591.7 340 86.5
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 5.0e-167 591.3 340 85.9
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 8.5e-167 590.5 340 86.5
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 1.1e-166 590.1 341 85.0
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.9e-166 589.3 340 85.3
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 9.3e-166 587.0 340 85.3
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 1.2e-165 586.6 340 85.9
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 1.2e-165 586.6 340 86.2
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 1.6e-165 586.3 340 85.6
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 1.6e-165 586.3 340 85.6
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 1.6e-165 586.3 340 85.6
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.6e-165 586.3 340 84.4
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.6e-165 586.3 340 85.6
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 2.1e-165 585.9 340 85.3
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 2.1e-165 585.9 340 85.0
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 2.7e-165 585.5 340 85.3
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 2.7e-165 585.5 340 85.3
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 2.7e-165 585.5 341 84.8
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 6.1e-165 584.3 332 87.0
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 7.9e-165 583.9 340 85.3
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 7.9e-165 583.9 340 85.3
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.3e-164 583.2 341 83.6
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.3e-164 583.2 341 83.9
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 1.3e-164 583.2 340 84.4
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-164 583.2 353 83.6
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.3e-164 583.2 340 83.2
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 2.3e-164 582.4 339 85.0
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.3e-164 582.4 340 85.9
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 3.9e-164 581.6 340 84.7
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 1.1e-163 580.1 340 85.0
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.5e-163 579.7 329 88.1
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 1.5e-163 579.7 364 81.3
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 1.9e-163 579.3 340 85.0
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 4.3e-163 578.2 335 85.7
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 4.3e-163 578.2 335 85.7
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 9.7e-163 577.0 340 85.0
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.6e-162 576.2 340 84.7
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 1.6e-162 576.2 340 83.2
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 1.6e-162 576.2 330 87.0
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 3.1e-161 572.0 340 84.1
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 4.1e-161 571.6 329 86.0
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 9.0e-161 570.5 340 82.6
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 5.9e-160 567.8 330 85.2
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 5.9e-160 567.8 340 82.1
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 2.2e-159 565.8 340 80.9
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 2.9e-159 565.5 386 76.7
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 5.0e-159 564.7 332 87.7
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 5.0e-159 564.7 340 82.1
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 2.5e-158 562.4 353 80.7
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 2.5e-158 562.4 340 82.9
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 3.2e-158 562.0 328 83.8
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 5.5e-158 561.2 340 81.5
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 2.7e-157 558.9 340 81.2
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 7.9e-157 557.4 328 85.1
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.9e-157 557.4 340 80.0
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.0e-156 557.0 348 78.4
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 6.7e-156 554.3 340 81.2
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 1.1e-155 553.5 340 80.0
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 2.6e-155 552.4 336 81.5
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 1.3e-154 550.1 340 80.3
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 4.8e-154 548.1 340 80.0
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 1.4e-150 536.6 332 83.1
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 1.4e-150 536.6 340 77.9
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 2.1e-149 532.7 348 78.7
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 7.9e-149 530.8 302 86.4
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-148 530.4 334 78.4
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.4e-148 530.0 302 85.8
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.5e-147 526.6 338 76.3
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 5.7e-147 524.6 308 83.8
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 8.2e-146 520.8 338 75.1
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 2.4e-145 519.2 340 78.2
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 3.5e-144 515.4 303 84.5
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 3.8e-143 511.9 347 74.9
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 6.5e-143 511.1 338 74.3
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 7.2e-142 507.7 326 79.1
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 9.4e-142 507.3 319 79.9
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.2e-141 506.9 337 76.0
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-141 506.5 337 76.0
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 1.6e-141 506.5 338 73.1
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.7e-141 505.0 331 76.4
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.0e-140 503.8 390 69.7
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.0e-140 502.3 340 73.8
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 4.0e-140 501.9 292 84.2
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 5.7e-139 498.0 335 75.8
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 9.7e-139 497.3 284 87.7
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 5.3e-137 491.5 340 74.1
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 1.0e-135 487.3 340 70.3
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.5e-135 484.6 345 72.2
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 5.5e-134 481.5 324 72.8
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.1e-129 464.2 337 70.3
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.6e-128 463.4 311 73.3
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 2.2e-127 459.5 345 68.4
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 6.5e-127 458.0 268 82.1
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.0e-119 431.8 335 67.5
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.1e-118 430.6 335 62.7
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 2.5e-118 429.5 292 74.7
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-113 412.1 347 64.8
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 2.5e-110 402.9 228 87.7
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 3.3e-110 402.5 252 79.4
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 1.2e-107 394.0 340 60.0
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.1e-105 387.5 356 60.1
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 9.5e-94 347.8 465 44.5
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.6e-93 347.1 360 53.6
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 7.6e-91 338.2 199 81.9
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.2e-89 332.8 201 80.6
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 3.4e-83 312.8 197 79.2
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 9.9e-83 311.2 354 47.7
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 2.4e-76 290.0 350 46.9
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 1.9e-73 280.4 174 81.0
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 4.2e-73 279.3 357 43.4
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 7.1e-73 278.5 239 61.1
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 2.5e-70 270.0 155 83.2
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.3e-69 267.7 152 86.8
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.1e-65 254.6 166 75.9
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 2.5e-57 226.9 158 74.7
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 4.2e-57 226.1 161 70.2
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 4.6e-56 222.6 253 53.0
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 3.8e-42 176.4 90 93.3
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 3.4e-35 153.3 94 81.9
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 3.6e-32 143.3 86 80.2
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 6.7e-31 139.0 235 39.1
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 5.7e-30 136.0 126 61.9
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 2.4e-20 104.0 129 48.1
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 2.7e-19 100.5 73 65.8
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 3.5e-19 100.1 96 58.3
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 2.7e-16 90.5 63 66.7
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 3.6e-16 90.1 168 38.1
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 5.0e-10 69.7 94 42.6
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 8.6e-10 68.9 70 50.0
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 1.5e-09 68.2 42 73.8
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 1.6e-08 64.7 32 84.4
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 2.1e-08 64.3 46 63.0
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 1.4e-07 61.6 38 81.6
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 3.0e-07 60.5 30 86.7


User provided reference genes

Program Settings