Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 9.6e-67 256.9 151 100.0
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 7.2e-38 161.0 151 65.6
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 1.2e-37 160.2 152 59.2
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 7.9e-37 157.5 151 57.6
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 1.3e-34 150.2 151 57.0
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 6.1e-29 131.3 151 51.7
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 2.0e-27 126.3 149 47.0
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 9.7e-27 124.0 150 46.7
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 4.1e-25 118.6 149 43.6
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 1.5e-24 116.7 151 44.4
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 2.6e-24 115.9 179 41.3
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.0e-23 114.0 152 45.4
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 1.7e-23 113.2 111 47.7
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.9e-22 109.8 151 41.7
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 3.2e-22 109.0 155 44.5
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 3.2e-22 109.0 151 43.7
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 4.2e-22 108.6 81 58.0
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 5.5e-22 108.2 149 45.6
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 7.2e-22 107.8 81 59.3
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 7.2e-22 107.8 81 59.3
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 7.2e-22 107.8 150 40.7
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 9.4e-22 107.5 81 59.3
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 1.2e-21 107.1 83 57.8
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.6e-21 106.7 190 44.7
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 2.1e-21 106.3 152 46.1
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 6.1e-21 104.8 159 40.9
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 2.3e-20 102.8 148 44.6
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 2.3e-20 102.8 151 39.7
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 3.9e-20 102.1 81 51.9
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 5.2e-20 101.7 110 50.9
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 6.7e-20 101.3 70 60.0
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 1.1e-19 100.5 145 41.4
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 2.0e-19 99.8 174 36.2
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 2.6e-19 99.4 197 35.5
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 2.6e-19 99.4 113 43.4
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 2.6e-19 99.4 113 43.4
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 3.3e-19 99.0 174 37.9
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 1.7e-18 96.7 165 39.4
BcaNung01562 Brassica carinata HOM05D001418 ORTHO05D003753 2.2e-18 96.3 158 41.8
BcaNung02743 Brassica carinata HOM05D001418 ORTHO05D003753 2.2e-18 96.3 158 41.8
A03p60290 Brassica napus HOM05D001418 ORTHO05D003753 2.2e-18 96.3 159 43.4
C07p58200 Brassica napus HOM05D001418 ORTHO05D003753 2.2e-18 96.3 158 41.8
BraA03t15071Z Brassica rapa HOM05D001418 ORTHO05D003753 2.2e-18 96.3 158 41.8
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 2.2e-18 96.3 152 37.5
BolC7t46274H Brassica oleracea HOM05D001418 ORTHO05D002038 2.8e-18 95.9 157 41.4
BcaNung04827 Brassica carinata HOM05D001418 ORTHO05D003753 3.7e-18 95.5 161 42.2
BcaC09g51866 Brassica carinata HOM05D001418 ORTHO05D003753 6.3e-18 94.7 159 41.5
C01p08160 Brassica napus HOM05D001418 ORTHO05D003753 6.3e-18 94.7 159 41.5
BolC1t00803H Brassica oleracea HOM05D001418 ORTHO05D003753 6.3e-18 94.7 159 41.5
AT4G30770 Arabidopsis thaliana HOM05D001418 ORTHO05D003753 8.2e-18 94.4 167 40.1
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 8.2e-18 94.4 119 42.9
THA.LOC104804459 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 8.2e-18 94.4 155 44.5
A01p07400 Brassica napus HOM05D001418 ORTHO05D003753 1.1e-17 94.0 159 41.5
BraA01t00689Z Brassica rapa HOM05D001418 ORTHO05D003753 1.1e-17 94.0 159 41.5
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 1.1e-17 94.0 169 39.6
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 1.4e-17 93.6 175 38.3
Thhalv10027257m.g Eutrema salsugineum HOM05D001418 ORTHO05D003753 1.8e-17 93.2 164 40.9
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 2.4e-17 92.8 152 36.8
THA.LOC104804402 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 2.4e-17 92.8 158 38.6
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 4.1e-17 92.0 152 35.5
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 5.3e-17 91.7 83 53.0
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 5.3e-17 91.7 161 36.6
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 7.0e-17 91.3 160 37.5
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.2e-16 90.5 75 57.3
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.2e-16 90.5 75 57.3
CARHR238610 Cardamine hirsuta HOM05D001418 ORTHO05D003753 2.0e-16 89.7 164 39.0
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 2.0e-16 89.7 185 39.5
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 2.6e-16 89.4 167 38.9
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 2.6e-16 89.4 147 39.5
AL7G21370 Arabidopsis lyrata HOM05D001418 ORTHO05D003753 4.5e-16 88.6 165 38.8
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 4.5e-16 88.6 184 34.2
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 4.5e-16 88.6 191 34.6
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 5.9e-16 88.2 74 51.4
Sp7g28640 Schrenkiella parvula HOM05D001418 ORTHO05D003753 5.9e-16 88.2 164 40.9
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 1.3e-15 87.0 72 54.2
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 2.2e-15 86.3 194 41.2
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 3.8e-15 85.5 193 40.9
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 3.8e-15 85.5 75 48.0
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 5.0e-15 85.1 69 52.2
Gorai.011G118700 Gossypium raimondii HOM05D001418 ORTHO05D003753 6.5e-15 84.7 108 40.7
Gohir.D10G108200 Gossypium hirsutum HOM05D001418 ORTHO05D003753 8.5e-15 84.3 175 33.7
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 1.1e-14 84.0 181 33.7
Gohir.A10G157222 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.2e-14 82.4 175 33.1
Carub.0007s0979 Capsella rubella HOM05D001418 ORTHO05D003753 4.2e-14 82.0 165 37.0
BcaC01g01138 Brassica carinata HOM05D001418 ORTHO05D003753 9.4e-14 80.9 164 37.8
C03p88500 Brassica napus HOM05D001418 ORTHO05D003753 9.4e-14 80.9 164 37.8
BolC3t21160H Brassica oleracea HOM05D001418 ORTHO05D003753 9.4e-14 80.9 164 37.8
VMungo1309G0848 Vigna mungo HOM05D001418 ORTHO05D003753 9.4e-14 80.9 148 37.8
BcaB03g12658 Brassica carinata HOM05D001418 ORTHO05D003753 3.6e-13 79.0 160 37.5
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 3.0e-12 75.9 66 54.5
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 4.0e-12 75.5 92 46.7
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 6.7e-12 74.7 83 42.2
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 1.5e-11 73.6 88 46.6
Gohir.D11G061300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 1.5e-11 73.6 125 36.8
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 2.0e-11 73.2 125 36.8
A08p19100 Brassica napus HOM05D001418 ORTHO05D003753 3.3e-11 72.4 111 41.4
BraA08t33872Z Brassica rapa HOM05D001418 ORTHO05D003753 3.3e-11 72.4 111 41.4
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 7.5e-11 71.2 136 34.6
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 2.2e-10 69.7 107 38.3
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.8e-10 69.3 65 46.2
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 2.8e-10 69.3 63 50.8
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 4.8e-10 68.6 65 46.2
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 6.3e-10 68.2 63 47.6
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 8.2e-10 67.8 73 42.5
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 8.2e-10 67.8 66 45.5
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 8.2e-10 67.8 66 45.5
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 4.1e-09 65.5 78 42.3
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 2.0e-08 63.2 62 50.0
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 2.7e-08 62.8 58 48.3
RcHm_v2.0_Chr2g0122171 Rosa chinensis HOM05D001418 ORTHO05D003753 5.9e-08 61.6 55 52.7
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 7.7e-08 61.2 61 45.9
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 1.0e-07 60.8 70 38.6
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.0e-07 60.8 60 40.0
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 1.3e-07 60.5 80 37.5
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 1.3e-07 60.5 66 37.9
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.3e-07 60.5 62 43.5
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 1.3e-07 60.5 64 43.8
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 1.7e-07 60.1 60 46.7
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 1.7e-07 60.1 67 43.3
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 2.9e-07 59.3 75 41.3
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 2.9e-07 59.3 62 43.5
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.9e-07 59.3 173 27.7
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 3.8e-07 58.9 112 35.7
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 3.8e-07 58.9 60 38.3
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 3.8e-07 58.9 118 30.5
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 5.0e-07 58.5 64 42.2
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 5.0e-07 58.5 72 37.5
Potri.007G103000 Populus trichocarpa HOM05D001418 ORTHO05D003753 6.5e-07 58.2 50 44.0
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 1.1e-06 57.4 101 34.7
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 1.1e-06 57.4 60 46.7
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.1e-06 57.4 60 36.7
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 1.5e-06 57.0 73 41.1
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 1.5e-06 57.0 60 45.0
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 1.5e-06 57.0 54 48.1
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 1.9e-06 56.6 60 41.7
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 1.9e-06 56.6 69 36.2
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.9e-06 56.6 63 41.3
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 1.9e-06 56.6 62 43.5
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 3.2e-06 55.8 62 43.5
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 3.2e-06 55.8 114 29.8
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 3.2e-06 55.8 60 41.7
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 4.2e-06 55.5 65 40.0
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 7.2e-06 54.7 60 43.3
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 7.2e-06 54.7 62 38.7
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 9.4e-06 54.3 60 43.3
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 9.4e-06 54.3 60 43.3
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 9.4e-06 54.3 60 43.3


User provided reference genes

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