Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.2e-82 310.1 196 100.0
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.0e-48 196.4 204 77.5
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.6e-45 185.3 200 58.5
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 6.6e-44 181.4 205 55.6
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.1e-43 180.6 217 54.8
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 3.3e-43 179.1 231 54.1
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 5.6e-43 178.3 205 53.7
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.3e-42 177.2 197 59.4
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.1e-42 176.4 201 56.2
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 2.1e-42 176.4 200 51.0
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 2.8e-42 176.0 204 67.2
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 2.8e-42 176.0 200 54.5
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 6.2e-42 174.9 201 67.7
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 8.1e-42 174.5 201 67.2
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.1e-41 174.1 222 65.8
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.4e-41 172.9 195 59.0
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.4e-41 172.9 205 56.6
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.1e-41 172.6 194 61.9
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.1e-41 172.6 209 67.9
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.1e-41 172.6 199 53.8
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 4.0e-41 172.2 195 66.7
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 4.0e-41 172.2 195 66.7
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 5.3e-41 171.8 201 69.7
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 5.3e-41 171.8 198 71.2
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 6.9e-41 171.4 203 55.2
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.6e-40 169.5 218 64.7
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 3.4e-40 169.1 204 68.6
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 4.5e-40 168.7 196 50.0
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 9.9e-40 167.5 224 64.7
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 9.9e-40 167.5 208 46.6
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 2.2e-39 166.4 210 59.5
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.9e-39 166.0 194 53.6
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 2.9e-39 166.0 217 62.2
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.9e-39 166.0 200 70.5
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 3.8e-39 165.6 226 52.2
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 6.4e-39 164.9 209 47.4
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-38 164.1 202 63.9
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-38 163.7 203 65.5
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.4e-38 163.7 204 63.2
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.9e-38 163.3 206 47.1
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 4.2e-38 162.2 212 62.7
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 7.1e-38 161.4 196 60.2
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.2e-37 160.6 202 46.5
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.1e-37 159.8 214 54.7
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.1e-37 159.8 209 52.6
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.5e-37 159.1 193 57.0
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.5e-37 159.1 209 52.6
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 4.6e-37 158.7 200 54.5
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 4.6e-37 158.7 191 65.4
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 6.0e-37 158.3 198 52.0
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.0e-36 157.5 214 57.9
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.0e-36 157.5 220 57.7
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.3e-36 157.1 207 62.3
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.8e-36 156.8 198 54.0
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.8e-36 156.8 226 61.9
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.8e-36 156.8 206 48.5
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.8e-36 156.8 230 41.3
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.3e-36 156.4 217 65.4
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.0e-36 156.0 253 57.7
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 5.1e-36 155.2 192 55.2
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.7e-36 154.8 196 49.5
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 6.7e-36 154.8 197 67.5
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.5e-35 153.7 189 64.6
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 5.6e-35 151.8 221 54.8
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 7.4e-35 151.4 197 65.0
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 7.4e-35 151.4 210 49.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 9.6e-35 151.0 191 52.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.3e-34 150.6 201 50.7
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-34 150.2 199 66.8
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.8e-34 149.4 187 64.7
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.8e-34 149.4 203 44.3
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.8e-34 149.4 244 53.7
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.8e-34 149.4 191 64.4
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 3.7e-34 149.1 206 55.8
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.8e-34 148.7 194 64.9
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 6.2e-34 148.3 217 48.8
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.1e-33 147.5 186 51.1
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.8e-33 146.7 191 44.0
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.8e-33 146.7 237 49.8
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.4e-33 146.4 186 61.3
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 4.0e-33 145.6 209 62.7
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 4.0e-33 145.6 215 45.6
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 6.9e-33 144.8 194 52.1
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 9.0e-33 144.4 196 42.3
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.2e-32 144.1 195 64.6
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.2e-32 144.1 193 61.1
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.0e-32 143.3 195 51.3
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.6e-32 142.9 229 47.6
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 4.5e-32 142.1 189 60.8
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 7.6e-32 141.4 201 58.2
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 7.6e-32 141.4 202 51.0
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.2e-31 139.8 199 60.8
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.9e-31 139.4 218 44.0
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-31 139.4 190 59.5
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 3.8e-31 139.0 197 59.9
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 3.8e-31 139.0 193 59.6
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 3.8e-31 139.0 243 52.7
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 4.9e-31 138.7 193 59.1
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 6.4e-31 138.3 180 55.0
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-30 137.5 204 61.3
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-30 137.5 204 61.3
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.1e-30 137.5 212 44.8
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.1e-30 137.5 196 64.3
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-30 137.1 185 57.8
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.9e-30 136.7 195 44.6
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.6e-29 133.7 193 54.4
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-29 133.3 193 55.4
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 2.1e-29 133.3 192 50.0
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.7e-29 132.9 201 50.2
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 4.6e-29 132.1 238 50.8
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 6.0e-29 131.7 208 49.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 6.0e-29 131.7 203 47.8
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 6.0e-29 131.7 198 60.1
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 7.9e-29 131.3 198 41.4
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.0e-28 131.0 188 60.1
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.3e-28 130.6 198 60.1
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-28 130.2 193 56.5
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 2.3e-28 129.8 196 54.1
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 2.3e-28 129.8 218 43.6
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.0e-28 129.4 203 49.8
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-28 129.0 201 51.2
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 5.1e-28 128.6 208 39.9
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 6.7e-28 128.3 201 53.2
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-28 128.3 184 39.1
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-28 128.3 193 54.9
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 6.7e-28 128.3 184 39.1
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.9e-27 126.7 210 53.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.5e-27 126.3 196 55.6
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.3e-27 125.9 140 60.0
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 5.6e-27 125.2 187 55.1
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.6e-26 123.6 191 56.0
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.1e-26 123.2 192 56.2
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 2.1e-26 123.2 217 56.7
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.8e-26 122.9 188 42.0
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 3.7e-26 122.5 214 43.9
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-25 120.6 184 37.0
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.4e-25 120.6 139 46.8
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 4.0e-25 119.0 206 51.5
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 6.9e-25 118.2 207 51.7
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 9.0e-25 117.9 188 43.1
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-24 117.5 191 48.7
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.6e-24 116.3 192 46.4
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 5.8e-24 115.2 185 45.9
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.2e-23 113.2 188 51.1
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-23 112.8 191 46.6
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-23 112.5 184 36.4
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 3.8e-23 112.5 184 36.4
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 3.8e-23 112.5 184 36.4
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 8.4e-23 111.3 191 47.1
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 8.4e-23 111.3 188 42.6
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 8.4e-23 111.3 112 50.9
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 3.2e-22 109.4 195 39.0
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.0e-20 104.4 128 49.2
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 7.4e-19 98.2 141 41.8
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.3e-18 95.1 222 36.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-16 90.9 141 56.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-16 90.9 141 56.0
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-16 90.1 141 56.7
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-16 90.1 141 56.7
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.0e-15 87.8 191 31.9
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.1e-14 84.3 196 52.6
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.4e-14 84.0 216 39.4
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.2e-14 82.4 196 52.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 9.4e-14 81.3 120 47.5
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.6e-13 80.5 196 52.0
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.6e-13 79.3 214 43.9
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-11 74.3 141 51.8
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.5e-11 73.2 95 40.0
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.4e-11 71.6 222 32.9
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.1e-09 66.2 189 29.1
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 5.3e-09 65.5 45 64.4
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 6.9e-09 65.1 36 80.6
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 7.7e-08 61.6 134 29.1
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.3e-07 60.8 145 27.6
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 1.4e-06 57.4 27 88.9
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 3.2e-06 56.2 44 50.0
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 5.5e-06 55.5 44 50.0


User provided reference genes

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