Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 1.3e-64 249.6 129 100.0
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 7.4e-52 207.2 129 83.7
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 5.3e-50 201.1 129 81.4
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 1.5e-44 183.0 117 81.2
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 2.9e-24 115.5 80 70.0
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 3.8e-24 115.2 84 65.5
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 6.6e-24 114.4 95 61.1
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 1.1e-23 113.6 114 54.4
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 1.9e-23 112.8 86 65.1
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 3.3e-23 112.1 80 67.5
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 3.3e-23 112.1 79 65.8
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 4.3e-23 111.7 82 67.1
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 4.3e-23 111.7 80 65.0
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 7.3e-23 110.9 135 48.9
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 7.3e-23 110.9 136 49.3
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 7.3e-23 110.9 97 60.8
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 7.3e-23 110.9 89 60.7
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 9.5e-23 110.5 84 65.5
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 1.2e-22 110.2 102 53.9
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 1.2e-22 110.2 79 65.8
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 2.1e-22 109.4 83 63.9
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 2.1e-22 109.4 115 53.0
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 2.1e-22 109.4 80 66.2
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 2.8e-22 109.0 95 58.9
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 3.6e-22 108.6 80 66.2
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 3.6e-22 108.6 79 63.3
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 6.1e-22 107.8 101 57.4
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 8.0e-22 107.5 82 64.6
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 8.0e-22 107.5 80 65.0
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 1.0e-21 107.1 80 68.8
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 1.0e-21 107.1 79 62.0
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 2.3e-21 105.9 80 62.5
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 2.3e-21 105.9 92 60.9
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 3.0e-21 105.5 107 54.2
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 4.0e-21 105.1 79 60.8
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 5.2e-21 104.8 132 48.5
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 5.2e-21 104.8 79 64.6
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 5.2e-21 104.8 80 65.0
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 5.2e-21 104.8 80 65.0
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 6.8e-21 104.4 93 57.0
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 6.8e-21 104.4 102 56.9
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 8.9e-21 104.0 79 64.6
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 1.2e-20 103.6 78 62.8
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 1.5e-20 103.2 104 51.0
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 1.5e-20 103.2 79 64.6
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.5e-20 103.2 79 64.6
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 2.0e-20 102.8 75 65.3
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.6e-20 102.4 79 63.3
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 3.4e-20 102.1 79 62.0
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 5.7e-20 101.3 103 55.3
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 5.7e-20 101.3 83 60.2
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 5.7e-20 101.3 79 64.6
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 9.8e-20 100.5 74 67.6
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 2.2e-19 99.4 101 55.4
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 2.9e-19 99.0 81 60.5
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 2.9e-19 99.0 105 52.4
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 3.7e-19 98.6 73 67.1
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 4.9e-19 98.2 77 61.0
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 4.9e-19 98.2 79 62.0
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 6.4e-19 97.8 117 47.9
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 6.4e-19 97.8 78 62.8
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 8.3e-19 97.4 110 50.0
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 8.3e-19 97.4 93 55.9
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 1.1e-18 97.1 104 51.9
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 1.1e-18 97.1 79 60.8
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 1.8e-18 96.3 75 65.3
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 1.8e-18 96.3 112 49.1
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 1.8e-18 96.3 75 62.7
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 2.4e-18 95.9 78 59.0
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 3.2e-18 95.5 76 61.8
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 3.2e-18 95.5 76 61.8
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 3.2e-18 95.5 76 61.8
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 3.2e-18 95.5 72 66.7
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 4.1e-18 95.1 75 64.0
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 4.1e-18 95.1 90 52.2
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 5.4e-18 94.7 76 63.2
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 5.4e-18 94.7 98 53.1
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 5.4e-18 94.7 99 51.5
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 7.0e-18 94.4 75 62.7
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 7.0e-18 94.4 75 61.3
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 7.0e-18 94.4 86 55.8
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 7.0e-18 94.4 77 59.7
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 9.2e-18 94.0 75 61.3
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 9.2e-18 94.0 75 61.3
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 9.2e-18 94.0 75 61.3
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 9.2e-18 94.0 75 61.3
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 1.2e-17 93.6 76 63.2
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 1.2e-17 93.6 97 52.6
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 1.6e-17 93.2 76 63.2
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 2.0e-17 92.8 76 61.8
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 2.0e-17 92.8 75 61.3
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 2.0e-17 92.8 86 55.8
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 2.7e-17 92.4 66 65.2
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 4.6e-17 91.7 75 61.3
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 4.6e-17 91.7 73 61.6
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 4.6e-17 91.7 81 60.5
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 1.0e-16 90.5 88 53.4
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 1.3e-16 90.1 100 48.0
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 3.0e-16 89.0 122 45.1
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 3.9e-16 88.6 76 52.6
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 6.6e-16 87.8 90 53.3
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 1.9e-15 86.3 107 44.9
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 1.9e-15 86.3 78 57.7
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 2.5e-15 85.9 108 50.9
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 4.7e-14 81.6 143 39.9
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 8.0e-14 80.9 63 68.3
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 8.0e-14 80.9 63 68.3
Aqoxy3G04334 Aquilegia oxysepala HOM05D006666 ORTHO05D008276 3.1e-13 79.0 53 66.0
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 6.8e-13 77.8 61 60.7
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 8.9e-13 77.4 60 63.3
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 7.5e-12 74.3 60 63.3
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 1.9e-10 69.7 55 56.4
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 2.4e-10 69.3 62 59.7
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 7.0e-10 67.8 108 39.8
Cre03.g203800 Chlamydomonas reinhardtii HOM05D006666 ORTHO05D008276 1.5e-07 60.1 98 36.7
Hma1.2p1_0816F.1_g222980 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 2.5e-07 59.3 57 56.1
COL.COLO4_37022 Corchorus olitorius HOM05D006666 ORTHO05D008276 7.3e-07 57.8 52 59.6


User provided reference genes

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