Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 8.4e-41 169.9 82 100.0
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 9.9e-34 146.4 82 85.4
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 7.8e-31 136.7 84 83.3
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.7e-30 135.6 82 80.5
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.3e-21 104.8 69 72.5
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 3.1e-19 98.2 71 69.0
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.3e-19 97.4 82 68.3
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.3e-19 97.4 71 71.8
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 6.9e-19 97.1 83 63.9
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 1.2e-18 96.3 83 62.7
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.5e-18 95.9 70 67.1
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.0e-18 95.5 71 67.6
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.0e-18 95.5 70 70.0
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.6e-18 95.1 70 65.7
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 2.6e-18 95.1 84 61.9
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 2.6e-18 95.1 81 61.7
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 2.6e-18 95.1 71 69.0
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.4e-18 94.7 74 66.2
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.4e-18 94.7 70 70.0
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 3.4e-18 94.7 70 70.0
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 3.4e-18 94.7 68 66.2
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 5.8e-18 94.0 71 63.4
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 5.8e-18 94.0 71 71.8
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 7.6e-18 93.6 76 64.5
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 7.6e-18 93.6 82 63.4
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.0e-17 93.2 68 66.2
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.0e-17 93.2 79 58.2
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.3e-17 92.8 71 64.8
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.3e-17 92.8 67 71.6
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.7e-17 92.4 71 62.0
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.7e-17 92.4 71 62.0
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.7e-17 92.4 71 62.0
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.7e-17 92.4 68 69.1
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.2e-17 92.0 71 62.0
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 2.2e-17 92.0 72 66.7
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.9e-17 91.7 71 62.0
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 2.9e-17 91.7 69 63.8
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.9e-17 91.7 75 60.0
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.9e-17 91.7 69 66.7
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 3.8e-17 91.3 75 62.7
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-17 91.3 71 60.6
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-17 91.3 71 60.6
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 3.8e-17 91.3 71 60.6
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 3.8e-17 91.3 73 64.4
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 3.8e-17 91.3 78 64.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 3.8e-17 91.3 70 67.1
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.9e-17 90.9 75 62.7
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 4.9e-17 90.9 71 60.6
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 4.9e-17 90.9 71 60.6
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 6.5e-17 90.5 76 60.5
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 6.5e-17 90.5 76 60.5
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 6.5e-17 90.5 76 60.5
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 6.5e-17 90.5 76 60.5
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 6.5e-17 90.5 76 60.5
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 6.5e-17 90.5 76 60.5
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 6.5e-17 90.5 71 62.0
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 6.5e-17 90.5 68 67.6
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 6.5e-17 90.5 86 57.0
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 6.5e-17 90.5 82 61.0
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 6.5e-17 90.5 76 60.5
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 8.4e-17 90.1 74 63.5
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 8.4e-17 90.1 76 61.8
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-16 89.7 71 60.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.1e-16 89.7 75 61.3
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.4e-16 89.4 73 61.6
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-16 89.4 78 56.4
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.4e-16 89.4 78 56.4
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-16 89.0 71 60.6
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-16 89.0 71 60.6
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-16 89.0 71 60.6
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.9e-16 89.0 72 66.7
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-16 89.0 72 66.7
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-16 89.0 72 66.7
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.5e-16 88.6 70 67.1
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 2.5e-16 88.6 67 64.2
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 2.5e-16 88.6 74 63.5
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.5e-16 88.6 71 60.6
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 3.2e-16 88.2 77 57.1
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 3.2e-16 88.2 71 60.6
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 3.2e-16 88.2 80 58.8
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.2e-16 88.2 72 61.1
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 3.2e-16 88.2 72 61.1
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 4.2e-16 87.8 76 57.9
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 4.2e-16 87.8 76 59.2
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-16 87.8 76 59.2
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 4.2e-16 87.8 76 59.2
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 5.5e-16 87.4 77 63.6
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 7.1e-16 87.0 72 59.7
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 7.1e-16 87.0 72 59.7
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 9.3e-16 86.7 75 60.0
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 9.3e-16 86.7 75 61.3
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 9.3e-16 86.7 75 61.3
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 9.3e-16 86.7 71 60.6
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-15 86.3 76 57.9
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.2e-15 86.3 76 57.9
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.6e-15 85.9 79 57.0
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.6e-15 85.9 69 59.4
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-15 85.9 71 59.2
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 1.6e-15 85.9 71 64.8
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.1e-15 85.5 71 63.4
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.1e-15 85.5 66 65.2
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.7e-15 85.1 71 63.4
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.7e-15 85.1 66 63.6
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 3.5e-15 84.7 70 64.3
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.0e-15 84.0 71 62.0
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 7.9e-15 83.6 70 64.3
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 1.3e-14 82.8 72 61.1
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 2.3e-14 82.0 77 55.8
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 3.0e-14 81.6 66 59.1
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.9e-14 81.3 74 55.4
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 3.9e-14 81.3 66 60.6
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 3.9e-14 81.3 74 58.1
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 6.7e-14 80.5 67 58.2
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 8.7e-14 80.1 66 57.6
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.1e-13 79.7 82 52.4
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.1e-13 79.7 70 57.1
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.1e-13 79.7 82 56.1
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.5e-13 78.6 69 59.4
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 7.4e-13 77.0 66 57.6
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 7.4e-13 77.0 65 60.0
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.3e-12 76.3 69 56.5
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 1.3e-12 76.3 84 50.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.3e-12 76.3 66 57.6
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.6e-12 75.9 71 52.1
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 2.1e-12 75.5 66 63.6
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.8e-12 75.1 68 55.9
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 2.8e-12 75.1 69 62.3
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.8e-12 75.1 57 68.4
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 2.8e-12 75.1 69 58.0
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 4.8e-12 74.3 70 57.1
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 8.2e-12 73.6 64 60.9
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.1e-11 73.2 99 46.5
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 4.0e-11 71.2 77 49.4
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 4.0e-11 71.2 66 54.5
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 5.3e-11 70.9 67 53.7
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 5.3e-11 70.9 66 54.5
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 9.0e-11 70.1 80 53.8
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 9.0e-11 70.1 72 50.0
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.5e-10 69.3 71 52.1
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.5e-10 69.3 67 50.7
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.6e-10 68.6 71 49.3
MELO3C006759.2 Cucumis melo HOM05D006810 ORTHO05D008501 3.4e-10 68.2 33 90.9
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 3.4e-10 68.2 73 47.9
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 5.8e-10 67.4 78 44.9
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.7e-09 65.9 69 55.1
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.9e-09 65.1 68 55.9
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 3.8e-09 64.7 82 43.9
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 2.5e-08 62.0 68 47.1
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 2.1e-07 58.9 53 62.3
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 6.7e-06 53.9 77 40.3
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 8.7e-06 53.5 72 45.8
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 8.7e-06 53.5 98 35.7


User provided reference genes

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