Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 0.0e+00 1200.7 634 100.0
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 2.6e-158 563.1 637 56.4
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.8e-152 543.1 656 53.4
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 3.8e-149 532.7 631 54.2
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 4.4e-129 466.1 635 49.8
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.3e-101 374.8 647 42.3
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 9.5e-92 342.0 686 40.1
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 9.2e-87 325.5 686 38.5
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.1e-86 324.3 642 39.3
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.7e-86 323.9 565 40.4
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.3e-85 321.6 657 38.5
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.0e-85 320.5 654 38.8
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 3.0e-85 320.5 686 37.3
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 5.1e-85 319.7 649 38.4
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.1e-84 318.5 571 39.9
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 1.2e-83 315.1 643 38.4
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-83 315.1 645 38.0
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.1e-83 314.3 685 36.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 6.2e-83 312.8 636 39.0
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-82 312.0 643 38.4
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 4.0e-82 310.1 703 36.3
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 6.8e-82 309.3 670 36.6
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-81 308.5 640 37.5
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.5e-81 308.1 666 38.1
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 4.4e-81 306.6 642 35.5
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.3e-80 305.1 656 36.9
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.7e-80 304.7 643 36.2
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.2e-80 304.3 661 36.5
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.9e-80 303.9 644 38.2
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.9e-80 303.9 636 38.5
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 8.4e-80 302.4 621 36.6
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.4e-79 301.6 696 36.1
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 3.2e-79 300.4 544 39.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.1e-79 299.3 653 36.1
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.2e-79 298.9 634 36.9
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.2e-78 298.5 636 37.1
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 6.0e-78 296.2 663 35.7
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 1.0e-77 295.4 689 34.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.3e-77 295.0 686 34.7
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 2.3e-77 294.3 356 50.3
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 5.1e-77 293.1 356 52.8
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 6.6e-77 292.7 708 36.2
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 8.6e-77 292.4 645 36.6
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.1e-76 292.0 634 36.6
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.1e-76 292.0 628 36.3
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.1e-76 292.0 662 35.5
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.5e-76 291.6 658 34.7
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 1.5e-76 291.6 653 34.3
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.9e-76 291.2 650 35.5
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.5e-76 290.8 641 37.1
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 2.5e-76 290.8 653 37.1
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 9.6e-76 288.9 285 57.2
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 9.6e-76 288.9 361 48.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.6e-75 288.1 358 51.4
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.1e-75 287.7 642 37.4
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.8e-74 284.6 650 35.5
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 8.9e-74 282.3 638 37.1
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 1.2e-73 282.0 655 36.6
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.5e-73 281.6 664 36.6
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 2.6e-73 280.8 335 51.6
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 2.6e-73 280.8 335 51.9
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.6e-73 280.8 335 51.6
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.6e-73 280.8 633 34.9
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 3.4e-73 280.4 582 37.5
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 3.4e-73 280.4 335 51.6
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 3.4e-73 280.4 623 34.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.4e-73 280.0 629 35.9
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 7.6e-73 279.3 659 34.9
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.9e-72 277.3 625 35.0
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 3.8e-72 276.9 561 36.7
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 3.8e-72 276.9 627 35.4
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 4.9e-72 276.6 641 34.6
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.4e-71 274.2 677 34.3
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.4e-71 274.2 636 35.5
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 3.2e-71 273.9 564 36.9
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.2e-70 271.9 624 35.3
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.6e-70 270.0 627 36.5
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 7.8e-70 269.2 554 38.1
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 3.9e-69 266.9 647 34.3
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.1e-69 266.5 646 35.4
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.1e-69 266.5 261 57.5
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.6e-69 266.2 619 34.2
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.7e-69 265.8 634 34.2
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.5e-68 265.0 636 35.8
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.9e-68 264.6 582 36.1
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 2.5e-68 264.2 287 55.4
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 9.6e-68 262.3 785 30.7
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 6.2e-67 259.6 567 36.9
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.4e-66 258.5 644 34.8
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 5.3e-66 256.5 634 35.2
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 6.9e-66 256.1 508 38.0
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.2e-65 255.4 625 34.4
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.6e-65 254.2 623 34.0
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 4.4e-65 253.4 574 35.7
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 4.4e-65 253.4 714 33.1
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.7e-64 251.5 635 34.0
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.9e-64 250.8 654 34.4
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.9e-64 250.0 631 33.6
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.1e-63 248.8 367 45.5
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.4e-63 248.4 252 57.5
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.1e-62 244.6 626 34.7
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 7.9e-62 242.7 419 41.5
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 7.9e-62 242.7 335 47.2
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.3e-59 235.3 684 32.3
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.8e-59 234.2 634 34.1
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.0e-57 228.0 630 33.0
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 2.6e-57 227.6 624 32.5
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 7.6e-57 226.1 646 32.8
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.2e-56 224.6 623 32.9
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 3.8e-56 223.8 649 31.6
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.1e-55 222.2 618 33.8
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 5.5e-55 219.9 292 47.6
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 5.5e-55 219.9 292 47.6
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.6e-54 218.4 630 33.0
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 2.1e-54 218.0 218 57.3
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.0e-53 215.7 316 44.3
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.8e-53 214.9 663 30.3
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.3e-53 214.5 670 31.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 1.5e-52 211.8 636 31.0
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.3e-52 210.7 515 33.6
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 5.6e-52 209.9 654 31.5
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 9.6e-52 209.1 238 52.5
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.3e-51 208.8 236 53.0
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 2.1e-51 208.0 316 43.7
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 8.1e-51 206.1 622 31.5
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 6.9e-50 203.0 623 30.5
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 2.9e-48 197.6 582 31.1
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 3.8e-48 197.2 589 31.1
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 8.4e-48 196.1 645 30.1
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 2.1e-46 191.4 489 33.3
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 4.8e-43 180.3 546 28.0
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 2.0e-41 174.9 535 30.1
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.4e-41 174.1 226 44.2
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 4.5e-41 173.7 659 28.7
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 5.9e-41 173.3 218 46.8
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.9e-39 168.3 197 51.8
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 9.3e-39 166.0 464 32.1
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.3e-36 157.5 223 45.3
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.3e-35 155.6 245 45.3
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.7e-35 154.1 237 40.5
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 6.3e-35 153.3 437 33.6
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.4e-34 152.1 457 31.5
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.4e-33 147.5 266 39.5
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.4e-31 142.1 320 34.1
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.5e-31 141.4 193 48.7
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.0e-29 136.0 262 33.2
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.2e-27 128.3 299 33.4
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 9.1e-26 122.9 207 37.7
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 2.9e-24 117.9 118 59.3
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.8e-24 117.5 190 40.5
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 3.9e-21 107.5 134 50.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.0e-20 105.1 545 25.3
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 2.2e-19 101.7 187 36.9
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.2e-19 99.8 327 30.9
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 4.5e-17 94.0 82 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.1e-15 89.4 494 24.7
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.1e-15 89.4 235 33.6
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 8.0e-14 83.2 204 35.3
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 2.0e-12 78.6 91 49.5
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.3e-12 77.8 72 58.3
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.3e-11 75.9 179 31.8
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 6.3e-11 73.6 59 57.6
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.2e-09 69.3 131 35.1
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 2.7e-09 68.2 175 31.4
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.0e-08 66.2 99 44.4
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.0e-08 66.2 72 50.0
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.3e-08 65.9 96 45.8
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 5.0e-08 63.9 114 40.4
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 9.4e-07 59.7 152 34.2


User provided reference genes

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