Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.4e-90 336.3 174 100.0
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 5.8e-84 314.3 174 90.2
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.2e-81 306.6 174 90.2
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 1.8e-80 302.8 174 87.9
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 9.0e-77 290.4 174 82.2
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 7.6e-76 287.3 174 81.0
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.0e-75 287.0 174 81.6
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 2.2e-75 285.8 174 81.6
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 80.5
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 3.8e-75 285.0 174 79.3
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 4.9e-75 284.6 174 79.9
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 6.5e-75 284.3 174 81.0
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 79.3
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 2.5e-74 282.3 174 80.5
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 79.3
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 4.2e-74 281.6 174 78.2
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 82.8
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 9.3e-74 280.4 174 79.3
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 9.3e-74 280.4 174 78.2
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 1.2e-73 280.0 174 78.7
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.6e-73 279.6 174 78.2
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 77.6
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 76.4
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 1.8e-72 276.2 174 78.7
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 3.0e-72 275.4 174 76.4
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 3.0e-72 275.4 174 77.0
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 3.9e-72 275.0 174 75.3
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.9e-72 275.0 174 75.3
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 6.7e-72 274.2 174 75.9
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.1e-71 273.5 174 78.7
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.1e-71 273.5 174 75.9
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 77.0
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 74.7
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 74.7
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 74.1
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 76.4
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.6e-70 269.6 194 70.6
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 75.9
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 75.9
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 75.9
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 77.6
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 75.3
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 6.9e-69 264.2 175 76.0
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 2.6e-68 262.3 174 73.0
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.0
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 5.9e-68 261.2 198 68.7
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 73.0
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 7.6e-68 260.8 175 72.6
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 7.6e-68 260.8 174 73.6
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 74.7
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 72.4
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 72.4
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 72.4
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 72.4
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 72.4
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 73.0
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 73.0
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.9e-66 256.1 174 72.4
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 73.0
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 71.3
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 5.5e-66 254.6 146 89.0
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 5.5e-66 254.6 171 74.3
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 75.9
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 70.7
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 73.0
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 70.7
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 70.7
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 71.8
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 71.3
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 6.1e-65 251.1 174 71.3
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 7.9e-65 250.8 174 71.8
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 71.3
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 1.8e-64 249.6 174 71.3
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.8e-64 249.6 174 70.7
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 8.7e-64 247.3 143 83.2
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 68.4
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 69.0
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 1.5e-63 246.5 173 68.2
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 69.5
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 68.4
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 2.2e-62 242.7 169 71.0
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 2.8e-62 242.3 173 70.5
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 2.8e-62 242.3 174 69.5
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 3.7e-62 241.9 164 72.0
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 1.1e-61 240.4 164 70.1
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.1e-61 240.4 158 73.4
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 69.5
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 4.1e-61 238.4 164 69.5
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 4.1e-61 238.4 174 70.7
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 4.1e-61 238.4 174 69.5
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 2.6e-60 235.7 174 69.0
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 69.5
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 5.9e-60 234.6 174 69.5
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 5.9e-60 234.6 174 69.5
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 5.9e-60 234.6 174 69.5
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 5.0e-59 231.5 174 69.5
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 3.2e-58 228.8 145 75.9
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 3.2e-58 228.8 175 66.9
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 1.2e-57 226.9 151 70.2
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.9e-57 224.2 154 69.5
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.0e-56 223.8 174 66.1
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.8e-56 223.0 174 67.2
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 1.8e-56 223.0 174 67.2
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 3.0e-56 222.2 174 65.5
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 7.4e-55 217.6 174 63.2
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 9.7e-55 217.2 174 63.8
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 2.6e-52 209.1 122 78.7
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 3.4e-52 208.8 174 64.4
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 4.5e-52 208.4 174 62.6
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 2.9e-51 205.7 122 79.5
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 5.0e-51 204.9 196 57.1
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 3.2e-50 202.2 172 59.3
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 4.2e-50 201.8 172 59.3
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 2.1e-49 199.5 174 60.9
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 2.1e-49 199.5 176 60.2
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.2e-48 194.9 122 73.8
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.1e-47 193.7 175 57.7
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.7e-46 189.9 239 46.9
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 2.2e-46 189.5 171 52.6
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 8.2e-46 187.6 182 57.1
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 5.9e-44 181.4 176 54.5
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 5.0e-43 178.3 172 50.6
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 6.1e-41 171.4 94 83.0
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 8.8e-40 167.5 173 53.2
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 7.5e-39 164.5 173 45.7
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 4.8e-38 161.8 94 77.7
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.6e-36 156.8 94 74.5
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 2.9e-35 152.5 93 74.2
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 2.7e-28 129.4 85 70.6
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 8.9e-24 114.4 96 53.1
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 1.5e-23 113.6 75 69.3
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 2.8e-22 109.4 127 52.8
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 2.8e-22 109.4 65 73.8
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 5.4e-21 105.1 168 36.3
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.9e-20 101.7 55 85.5
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 3.8e-19 99.0 130 37.7
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.6e-19 98.2 53 86.8
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.2e-17 94.0 48 91.7
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 1.6e-17 93.6 85 61.2
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.6e-12 77.0 38 89.5
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.3e-11 73.9 176 30.1
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 3.9e-11 72.4 93 49.5
MELO3C033061.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.9e-06 55.5 31 83.9
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 8.3e-06 54.7 48 56.2


User provided reference genes

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