Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 2.2e-249 865.1 439 100.0
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 4.0e-206 721.5 429 86.0
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.7e-196 689.5 429 81.8
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 3.1e-182 642.1 449 76.4
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.6e-151 540.0 428 63.1
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 1.4e-147 526.9 427 61.4
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 9.4e-147 524.2 427 61.1
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 1.6e-146 523.5 427 61.8
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 3.9e-145 518.8 426 61.3
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 5.1e-145 518.5 427 63.0
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 2.0e-144 516.5 427 61.6
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 1.3e-143 513.8 406 63.5
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.4e-142 509.6 427 60.9
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 3.4e-141 505.8 427 60.7
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 5.9e-141 505.0 428 59.3
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 5.9e-141 505.0 393 64.1
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 5.0e-140 501.9 409 61.4
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 1.1e-139 500.7 427 60.4
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 4.2e-139 498.8 402 63.2
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 3.9e-137 492.3 427 59.5
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 6.7e-137 491.5 427 59.5
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 2.0e-136 490.0 430 57.9
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.2e-135 486.5 427 58.1
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 9.1e-134 481.1 384 61.7
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.3e-132 477.2 393 59.8
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 1.7e-132 476.9 427 58.1
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 1.1e-131 474.2 386 61.9
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 9.4e-131 471.1 390 59.2
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 1.6e-130 470.3 406 58.6
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 2.7e-130 469.5 390 59.2
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 5.2e-129 465.3 383 59.8
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 1.1e-128 464.2 391 60.6
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 4.4e-128 462.2 383 59.3
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.7e-128 461.8 385 58.7
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 5.7e-128 461.8 391 57.5
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 1.3e-127 460.7 427 56.4
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.7e-127 460.3 385 58.4
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 3.7e-127 459.1 384 60.7
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 3.1e-126 456.1 383 58.5
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 7.0e-126 454.9 385 59.7
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 9.1e-126 454.5 373 60.9
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 9.1e-126 454.5 376 62.8
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 4.5e-125 452.2 387 60.5
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 2.2e-124 449.9 435 52.4
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.8e-124 449.1 383 58.2
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.9e-123 446.8 374 59.1
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 2.5e-123 446.4 386 58.5
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 3.2e-123 446.0 429 53.1
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 4.2e-123 445.7 391 58.1
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 7.2e-123 444.9 397 56.4
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 7.2e-123 444.9 390 57.7
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 9.4e-123 444.5 386 57.5
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 4.7e-122 442.2 430 54.7
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 8.0e-122 441.4 383 58.0
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.4e-121 440.7 468 52.1
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 1.4e-121 440.7 422 53.1
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.3e-119 434.1 381 58.5
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 2.8e-119 433.0 386 57.3
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 3.7e-119 432.6 385 55.8
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 1.4e-118 430.6 450 54.0
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 3.5e-117 426.0 353 59.8
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 2.9e-116 422.9 395 51.9
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.1e-115 421.0 386 52.8
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.1e-115 421.0 382 53.4
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 4.7e-114 415.6 382 53.7
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 8.3e-111 404.8 366 57.4
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.4e-110 404.1 380 55.0
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 7.7e-109 398.3 432 50.2
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 3.8e-108 396.0 379 51.5
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 4.2e-107 392.5 347 59.1
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.6e-106 390.6 321 61.7
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.8e-106 389.8 379 51.2
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 1.8e-105 387.1 379 50.7
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.0e-105 386.3 385 51.9
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 4.0e-105 386.0 379 50.4
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 8.9e-105 384.8 385 51.7
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 3.4e-104 382.9 380 50.8
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 5.7e-104 382.1 390 50.0
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 1.7e-103 380.6 379 51.2
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 6.3e-103 378.6 379 50.9
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 6.3e-103 378.6 379 50.9
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.4e-102 377.5 421 51.8
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 1.8e-102 377.1 379 50.9
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 3.2e-102 376.3 331 58.6
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 7.0e-102 375.2 379 49.6
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 2.7e-101 373.2 379 50.1
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 5.9e-101 372.1 379 50.4
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 3.9e-100 369.4 383 50.7
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.6e-98 364.0 287 62.7
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.6e-98 364.0 418 47.4
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 6.1e-98 362.1 377 52.8
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.4e-97 360.9 374 50.5
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 2.9e-95 353.2 418 47.6
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.4e-94 350.9 337 52.5
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 7.0e-94 348.6 337 52.8
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 4.6e-93 345.9 401 46.4
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.3e-84 317.8 326 49.7
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.7e-82 309.3 386 45.3
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 2.6e-80 303.5 377 45.4
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 7.6e-80 302.0 306 52.6
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.6e-77 294.3 409 43.0
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.0e-72 277.3 307 48.9
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.4e-70 270.4 355 45.4
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.1e-65 255.0 415 39.5
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 2.4e-65 253.8 321 45.2
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 6.6e-60 235.7 390 39.2
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 4.0e-57 226.5 331 41.4
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 2.2e-55 220.7 360 40.0
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.4e-54 217.2 251 44.2
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 9.3e-46 188.7 202 48.0
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.7e-39 167.9 375 33.3
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.2e-39 167.5 188 47.9
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 9.3e-38 162.2 149 53.7
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.5e-37 160.2 178 47.2
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 9.7e-35 152.1 163 50.3
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 9.7e-35 152.1 163 50.3
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 5.9e-32 142.9 347 29.7
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 4.2e-30 136.7 348 28.2
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 2.1e-29 134.4 244 36.1
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.8e-26 123.2 111 53.2
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 6.3e-26 122.9 374 27.5
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.4e-25 121.7 123 49.6
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 6.9e-25 119.4 162 43.8
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.0e-23 115.5 73 72.6
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 5.5e-22 109.8 107 54.2
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 3.6e-21 107.1 95 54.7
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.0e-20 104.0 113 45.1
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.4e-19 100.1 100 56.0
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 9.7e-19 99.0 81 65.4
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 5.0e-15 86.7 108 47.2
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 6.7e-12 76.3 69 53.6
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 6.7e-12 76.3 69 53.6
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 5.0e-07 60.1 42 71.4
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 6.5e-07 59.7 61 49.2
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 8.5e-07 59.3 245 22.4


User provided reference genes

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