Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 4.8e-205 717.6 363 100.0
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.0e-187 659.1 371 89.2
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.2e-184 649.8 361 89.8
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.9e-182 642.5 361 89.2
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.8e-167 592.8 364 78.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.4e-164 583.2 361 77.6
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.4e-164 582.4 361 77.0
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.2e-163 580.1 362 76.8
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 3.8e-162 575.1 361 75.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 8.5e-162 573.9 361 76.2
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.2e-161 572.0 361 75.3
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 9.4e-161 570.5 357 75.9
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 3.6e-160 568.5 417 68.3
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 8.0e-160 567.4 361 74.8
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.0e-159 567.0 361 76.2
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 3.0e-159 565.5 363 76.0
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.2e-158 563.5 361 76.7
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.0e-158 562.8 361 75.6
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.8e-157 558.9 364 75.5
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 3.7e-157 558.5 361 73.4
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 4.8e-157 558.1 364 72.3
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 2.4e-156 555.8 361 74.0
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 7.0e-156 554.3 361 73.7
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 3.5e-155 552.0 358 74.9
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.5e-155 551.6 361 72.6
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 4.5e-155 551.6 363 73.6
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 5.9e-155 551.2 359 74.4
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.9e-155 551.2 361 72.6
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 5.9e-155 551.2 361 74.5
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.7e-154 549.7 369 70.5
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 2.9e-154 548.9 361 72.9
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.9e-154 548.9 363 73.8
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.1e-153 547.0 373 70.5
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 1.1e-153 547.0 369 71.0
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-153 546.6 361 72.0
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.5e-153 546.6 361 73.1
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.9e-153 546.2 361 72.3
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.9e-153 546.2 362 71.8
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.5e-153 545.8 361 73.1
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 3.2e-153 545.4 361 73.4
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 3.2e-153 545.4 362 71.8
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 7.2e-153 544.3 362 71.3
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 9.4e-153 543.9 361 72.3
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.1e-152 541.2 361 71.7
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.0e-151 540.4 361 73.1
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.0e-151 540.4 363 71.9
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 3.0e-151 538.9 361 72.0
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.2e-150 537.0 360 70.6
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.0e-150 536.2 362 70.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.0e-150 536.2 362 71.0
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 4.4e-150 535.0 361 71.7
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 9.8e-150 533.9 360 70.3
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.8e-149 532.3 369 69.4
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.8e-149 532.3 360 71.9
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.8e-149 532.3 360 71.9
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 3.7e-149 531.9 360 70.0
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 8.3e-149 530.8 393 67.2
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 2.4e-148 529.3 360 69.2
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 2.4e-148 529.3 357 73.1
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 4.1e-148 528.5 359 69.9
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 5.4e-148 528.1 359 70.2
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 5.4e-148 528.1 360 70.3
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 9.1e-148 527.3 359 72.7
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.2e-147 526.9 319 77.4
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.6e-147 526.6 360 69.4
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.6e-147 526.6 360 69.2
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 2.7e-147 525.8 360 69.4
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 3.5e-147 525.4 357 70.3
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 4.5e-147 525.0 360 69.4
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.3e-146 523.5 360 69.7
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.3e-146 522.7 396 65.4
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.3e-146 522.7 361 69.5
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.1e-145 520.4 361 68.7
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.5e-145 520.0 351 71.2
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.5e-145 520.0 357 70.6
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.2e-144 516.9 352 71.3
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 3.4e-142 508.8 352 69.9
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.5e-142 507.7 363 68.0
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 9.8e-142 507.3 361 68.1
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 9.8e-142 507.3 360 66.9
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 3.7e-141 505.4 397 64.5
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.8e-140 503.1 383 65.8
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.1e-140 502.3 386 63.7
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.0e-140 501.1 386 63.7
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-139 500.4 386 63.7
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.7e-139 499.2 360 68.6
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.5e-139 498.4 355 67.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.5e-139 498.4 361 67.9
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.1e-137 493.8 326 74.2
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.6e-136 490.0 361 67.0
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 6.1e-136 488.0 318 73.6
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 7.5e-134 481.1 361 65.4
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 7.5e-134 481.1 361 65.4
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.2e-133 479.6 315 72.4
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.4e-133 478.0 361 65.7
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 3.2e-132 475.7 377 64.5
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 5.4e-132 474.9 353 66.0
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 5.4e-132 474.9 292 78.8
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 9.2e-132 474.2 358 63.7
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 2.5e-129 466.1 357 63.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 7.3e-129 464.5 363 64.5
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 6.2e-128 461.5 301 74.8
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.0e-127 458.8 354 64.7
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.6e-126 456.1 361 62.6
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 6.0e-123 444.9 298 74.2
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.3e-122 443.7 325 66.8
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 3.3e-121 439.1 292 70.2
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 5.2e-119 431.8 298 68.5
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.5e-113 413.7 386 56.7
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 9.9e-110 401.0 361 58.4
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 8.4e-109 397.9 361 56.2
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.0e-106 391.0 286 66.8
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 8.7e-106 387.9 286 64.0
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.1e-104 383.3 361 56.5
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.1e-103 380.9 350 54.0
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.5e-102 377.1 361 52.4
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 6.0e-99 365.2 363 54.5
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 7.8e-99 364.8 367 55.6
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.3e-96 357.5 309 55.3
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.8e-96 356.3 342 52.0
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.6e-96 355.9 269 66.5
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.4e-95 354.0 336 51.5
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.6e-91 340.5 366 51.1
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.2e-62 244.6 152 75.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.9e-60 237.3 328 39.9
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.7e-51 206.8 135 71.1
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.2e-48 197.2 375 34.4
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.6e-41 173.7 128 69.5
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-37 160.6 137 58.4
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 8.5e-37 158.7 335 33.1
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.0e-33 147.5 197 43.7
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 9.8e-33 145.2 103 69.9
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.4e-31 141.4 135 54.8
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.0e-29 135.2 116 63.8
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-29 134.4 92 70.7
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-28 131.3 92 68.5
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.0e-26 123.6 87 69.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.2e-26 122.9 87 69.0
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.4e-23 114.0 351 25.9
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 5.4e-23 112.8 110 49.1
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-22 111.3 110 49.1
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.5e-22 110.2 90 58.9
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 2.9e-21 107.1 106 61.3
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.6e-21 105.5 79 65.8
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.3e-20 103.6 78 65.4
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.3e-20 103.6 79 64.6
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.3e-20 103.2 82 63.4
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.6e-20 102.8 78 64.1
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.6e-20 102.8 78 64.1
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-19 101.7 78 64.1
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.1e-19 99.4 79 60.8
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.1e-19 99.4 70 67.1
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.1e-19 99.4 78 62.8
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-18 97.4 79 59.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 3.1e-18 97.1 75 65.3
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.4e-17 93.6 104 51.0
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 4.1e-15 86.7 45 93.3
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 6.0e-14 82.8 60 71.7
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 3.9e-13 80.1 67 67.2
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.1e-11 74.3 56 64.3
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.6e-11 73.6 86 47.7
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 7.5e-09 65.9 52 65.4
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 2.4e-07 60.8 43 69.8
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 7.0e-07 59.3 42 69.0
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 3.5e-06 57.0 42 64.3
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 3.5e-06 57.0 43 67.4
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.5e-06 57.0 49 55.1
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 7.8e-06 55.8 48 56.2
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.8e-06 55.8 43 62.8
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 7.8e-06 55.8 49 55.1
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 7.8e-06 55.8 49 55.1


User provided reference genes

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