Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 1.5e-292 1008.8 516 100.0
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 7.4e-244 847.0 519 84.6
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 2.5e-239 832.0 518 83.0
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 3.3e-228 795.0 518 80.5
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 2.1e-142 510.0 524 54.2
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 6.5e-139 498.4 522 54.2
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 5.5e-138 495.4 520 53.8
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 7.9e-137 491.5 520 54.8
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 8.7e-136 488.0 519 53.9
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 7.4e-135 485.0 523 53.3
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 9.7e-135 484.6 519 53.2
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 5.3e-133 478.8 528 51.9
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.2e-132 477.6 519 52.2
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 2.0e-132 476.9 519 52.6
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 2.0e-132 476.9 519 52.8
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 9.4e-130 468.0 517 52.4
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 2.7e-129 466.5 523 52.4
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 3.9e-128 462.6 523 50.9
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 5.1e-128 462.2 601 47.4
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 5.1e-128 462.2 515 52.6
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 5.7e-127 458.8 521 49.5
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 7.4e-127 458.4 523 51.2
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.5e-124 450.7 525 50.9
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 2.6e-124 449.9 518 47.7
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 1.1e-122 444.5 520 49.2
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 7.2e-122 441.8 519 48.2
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 2.7e-121 439.9 519 49.9
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 3.6e-121 439.5 523 50.7
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 3.6e-121 439.5 574 47.9
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 1.0e-120 438.0 521 48.2
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.0e-120 438.0 437 54.2
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 1.8e-120 437.2 410 55.9
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.5e-119 434.1 525 49.0
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 7.4e-119 431.8 517 49.3
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 1.3e-118 431.0 519 46.4
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.7e-118 430.6 466 51.5
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 3.7e-118 429.5 438 54.3
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 1.1e-117 427.9 518 48.3
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.8e-117 427.2 522 46.6
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 5.3e-117 425.6 519 46.6
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 9.1e-117 424.9 473 51.0
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.2e-116 424.5 440 52.3
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.3e-115 421.0 440 52.3
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 1.1e-114 417.9 526 47.9
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 1.1e-114 417.9 520 47.3
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 4.2e-114 416.0 490 49.4
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 4.2e-114 416.0 501 48.5
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 8.0e-113 411.8 436 50.5
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 8.0e-113 411.8 438 52.7
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.0e-112 411.4 570 44.9
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.8e-112 410.6 524 46.8
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 5.2e-112 409.1 525 46.7
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 2.0e-111 407.1 441 51.0
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 4.4e-111 406.0 487 47.2
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 9.7e-111 404.8 523 46.8
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 2.4e-109 400.2 439 51.3
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 3.1e-109 399.8 530 47.7
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 1.2e-108 397.9 523 44.9
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.6e-108 396.7 440 50.5
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.5e-108 396.0 441 50.3
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.0e-107 394.8 519 48.0
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.3e-107 394.4 526 46.8
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 1.3e-107 394.4 525 46.5
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 8.5e-107 391.7 424 52.8
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 2.5e-106 390.2 517 46.2
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 3.2e-106 389.8 522 47.3
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 4.2e-106 389.4 522 47.3
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 5.5e-106 389.0 431 51.3
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 5.5e-106 389.0 440 51.6
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 7.2e-106 388.7 524 45.8
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 9.4e-106 388.3 434 49.3
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 1.2e-105 387.9 428 51.9
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 3.6e-105 386.3 525 45.3
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 2.3e-104 383.6 516 46.9
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 8.8e-104 381.7 458 48.0
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.2e-103 381.3 438 49.1
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 2.0e-103 380.6 515 46.6
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 2.0e-103 380.6 515 46.6
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 9.7e-103 378.3 424 51.7
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 2.2e-102 377.1 424 51.4
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 3.7e-102 376.3 421 47.7
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 3.7e-102 376.3 532 44.7
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 5.3e-101 372.5 523 42.8
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 2.0e-100 370.5 526 43.7
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.9e-99 366.7 350 55.4
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 8.5e-99 365.2 528 42.0
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 3.2e-98 363.2 464 44.2
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 9.4e-98 361.7 512 43.4
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 3.0e-96 356.7 522 42.9
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 4.0e-96 356.3 519 42.0
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 2.8e-94 350.1 490 41.4
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 6.1e-89 332.4 485 41.0
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 2.6e-87 327.0 375 46.9
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 5.4e-85 319.3 373 47.2
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.0e-80 305.1 475 40.6
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.1e-77 295.0 429 42.9
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.1e-77 293.1 307 51.8
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.5e-74 284.6 537 36.5
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 3.2e-69 266.9 497 35.4
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 6.0e-68 262.7 378 41.0
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.0e-67 261.9 210 63.3
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.6e-60 238.0 188 63.8
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 8.6e-59 232.3 440 38.6
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 4.3e-58 229.9 332 42.5
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 3.4e-47 193.7 142 65.5
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.9e-45 188.0 285 40.0
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 7.8e-44 182.6 447 31.5
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.7e-43 181.4 307 38.8
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 4.3e-42 176.8 236 42.4
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.4e-40 171.8 296 37.5
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 7.6e-39 166.0 452 32.1
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 6.0e-36 156.4 461 29.9
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 2.3e-35 154.5 423 28.6
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.1e-34 152.1 258 39.9
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 3.7e-33 147.1 279 35.5
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.8e-31 139.8 125 57.6
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.7e-30 138.3 259 39.0
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 2.5e-29 134.4 141 46.8
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 4.6e-28 130.2 115 57.4
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.3e-18 97.1 122 44.3
MELO3C035444.2 Cucumis melo HOM05D006020 ORTHO05D007665 9.7e-18 95.9 61 80.3
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 1.0e-14 85.9 193 30.6
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 2.2e-14 84.7 68 60.3
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.8e-08 65.1 126 37.3
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.5e-07 60.5 98 36.7
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.7e-07 59.7 80 40.0
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 6.5e-06 56.6 63 41.3


User provided reference genes

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