Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.3e-140 503.1 251 100.0
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 4.3e-112 408.3 266 79.7
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 9.5e-112 407.1 261 80.8
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 9.2e-107 390.6 259 79.2
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 1.7e-89 333.2 248 69.8
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 1.4e-78 297.0 254 63.0
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 1.7e-76 290.0 232 65.1
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 3.8e-76 288.9 227 66.5
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.0e-73 280.8 223 66.4
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.0e-73 280.8 223 66.4
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 1.0e-73 280.8 225 64.9
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 2.3e-73 279.6 237 62.4
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 1.1e-72 277.3 246 62.6
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 2.5e-72 276.2 235 61.7
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 4.3e-72 275.4 227 63.4
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 7.4e-72 274.6 228 62.3
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 1.3e-71 273.9 222 64.0
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 3.1e-70 269.2 253 57.7
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 9.0e-70 267.7 270 57.4
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 9.0e-70 267.7 284 54.6
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 9.0e-70 267.7 259 56.8
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.0e-69 266.5 228 61.8
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 2.6e-69 266.2 249 56.6
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 2.6e-69 266.2 257 57.2
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.4e-69 265.8 231 61.9
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 3.4e-69 265.8 227 59.0
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 4.5e-69 265.4 253 57.3
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 7.6e-69 264.6 226 60.2
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 7.6e-69 264.6 239 60.3
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 7.6e-69 264.6 247 56.7
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 2.2e-68 263.1 223 61.4
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 6.5e-68 261.5 249 57.0
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 4.6e-66 255.4 256 54.7
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 4.6e-66 255.4 256 54.7
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 6.7e-65 251.5 253 54.5
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 5.7e-64 248.4 248 53.2
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 5.7e-64 248.4 247 54.7
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 8.2e-63 244.6 251 53.8
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 4.1e-62 242.3 235 55.7
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 1.3e-60 237.3 181 67.4
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 5.0e-60 235.3 203 62.6
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 1.1e-59 234.2 212 61.3
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 1.1e-59 234.2 256 53.5
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 1.4e-59 233.8 241 52.3
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 3.2e-59 232.6 254 53.5
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 3.2e-59 232.6 244 54.1
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 3.6e-58 229.2 269 50.2
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 3.6e-58 229.2 239 54.0
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.6e-58 229.2 248 52.0
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.6e-58 229.2 248 52.0
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.6e-58 229.2 248 52.0
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 1.0e-57 227.6 239 54.0
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.5e-56 223.0 221 54.8
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 2.5e-56 223.0 181 61.9
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 2.5e-56 223.0 181 61.9
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 5.7e-56 221.9 239 49.8
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 7.4e-56 221.5 250 50.0
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 9.7e-56 221.1 232 52.6
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 9.7e-56 221.1 158 67.7
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.3e-55 220.7 232 52.6
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 1.7e-55 220.3 247 47.0
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 2.8e-55 219.5 232 52.2
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 2.8e-55 219.5 251 50.6
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 2.8e-55 219.5 251 50.6
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 9.1e-54 214.5 224 51.8
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.2e-53 214.2 238 47.9
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 2.2e-52 209.9 232 53.4
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 2.9e-52 209.5 249 49.0
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.1e-51 207.6 223 50.7
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.0e-49 199.5 227 49.3
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 4.4e-48 195.7 231 47.6
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 7.4e-48 194.9 226 50.0
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 9.7e-48 194.5 162 58.0
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.8e-47 193.0 207 51.2
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 3.7e-47 192.6 183 55.2
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.8e-46 190.3 207 50.7
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 3.1e-46 189.5 234 47.0
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 5.3e-46 188.7 251 43.8
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.6e-45 187.2 228 45.6
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 1.0e-44 184.5 166 53.6
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 2.1e-42 176.8 250 44.0
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 4.7e-42 175.6 150 60.0
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 1.0e-41 174.5 219 43.4
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.3e-41 173.3 130 66.2
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 1.5e-40 170.6 148 56.1
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 2.6e-40 169.9 154 56.5
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 2.4e-38 163.3 300 37.7
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 3.1e-38 162.9 239 42.7
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 3.1e-38 162.9 230 44.3
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 3.8e-36 156.0 189 45.5
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 6.5e-36 155.2 142 56.3
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 8.5e-36 154.8 226 40.7
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 1.1e-35 154.5 148 58.1
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.5e-35 154.1 223 40.4
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 1.9e-35 153.7 140 56.4
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 4.2e-35 152.5 144 59.0
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 5.5e-35 152.1 144 59.0
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 7.2e-35 151.8 140 55.7
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 7.2e-35 151.8 282 34.8
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 1.6e-34 150.6 236 41.1
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.6e-34 150.6 147 54.4
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 4.7e-34 149.1 153 53.6
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 4.7e-34 149.1 142 54.9
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 6.1e-34 148.7 142 55.6
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 6.1e-34 148.7 145 56.6
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 8.0e-34 148.3 147 53.7
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 6.8e-33 145.2 155 51.0
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 2.0e-32 143.7 228 37.3
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 2.6e-32 143.3 144 54.2
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 4.8e-31 139.0 157 50.3
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 2.7e-29 133.3 178 44.4
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 1.7e-28 130.6 153 49.0
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 5.5e-27 125.6 146 50.0
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.7e-23 114.0 223 36.8
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 2.3e-20 103.6 101 46.5
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 5.6e-19 99.0 85 58.8
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.1e-14 84.7 62 58.1
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 3.1e-09 66.6 72 40.3
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 2.0e-08 63.9 82 39.0
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 4.4e-08 62.8 69 46.4
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 1.7e-07 60.8 92 34.8


User provided reference genes

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