Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 0.0e+00 1245.7 624 100.0
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 4.1e-281 971.1 639 79.2
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 1.7e-255 885.9 642 73.7
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 4.7e-184 648.7 606 57.4
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 7.0e-180 634.8 622 56.6
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 2.2e-178 629.8 603 56.9
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 2.5e-177 626.3 622 55.8
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 2.7e-176 622.9 605 55.5
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 4.7e-176 622.1 598 57.0
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 8.8e-175 617.8 613 54.8
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 8.3e-173 611.3 625 54.9
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 2.7e-171 606.3 610 54.6
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 4.5e-171 605.5 608 53.5
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 1.0e-170 604.4 624 54.8
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 2.3e-170 603.2 616 53.6
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 1.5e-169 600.5 612 53.1
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 3.3e-169 599.4 615 52.8
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 2.1e-168 596.7 619 52.0
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 3.0e-167 592.8 631 53.2
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 4.4e-166 589.0 613 53.2
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 2.2e-165 586.6 642 50.2
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 6.3e-165 585.1 618 51.8
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 6.3e-165 585.1 603 52.4
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 1.8e-164 583.6 606 52.3
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 1.6e-163 580.5 609 53.2
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 2.7e-163 579.7 603 53.6
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 1.7e-162 577.0 633 50.6
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 2.3e-162 576.6 618 51.8
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 6.6e-162 575.1 611 53.0
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 2.5e-161 573.2 602 53.0
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 3.3e-161 572.8 600 53.2
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 5.6e-161 572.0 609 50.6
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 3.6e-160 569.3 606 50.2
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 6.1e-160 568.5 605 51.9
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 6.1e-160 568.5 612 51.0
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 1.8e-159 567.0 589 54.2
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 1.8e-159 567.0 610 49.8
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 3.1e-159 566.2 601 51.4
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 9.8e-158 561.2 609 51.9
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 2.2e-157 560.1 599 50.6
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 2.9e-157 559.7 606 50.2
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 3.7e-157 559.3 578 54.2
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 2.4e-156 556.6 607 50.4
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 3.2e-156 556.2 578 53.6
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 5.4e-156 555.4 600 52.7
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 9.2e-156 554.7 599 51.4
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 3.5e-155 552.7 659 49.3
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 4.6e-155 552.4 652 48.3
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 7.8e-155 551.6 617 48.9
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 2.3e-154 550.1 582 53.1
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 8.6e-154 548.1 626 49.0
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 1.2e-152 544.3 613 50.2
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 2.3e-151 540.0 604 50.3
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 6.8e-151 538.5 674 45.8
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 1.2e-150 537.7 610 47.7
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.7e-149 533.9 618 47.9
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 1.1e-148 531.2 625 46.6
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 4.7e-144 515.8 623 45.6
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 4.0e-143 512.7 605 47.8
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 8.9e-143 511.5 621 47.5
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 8.9e-143 511.5 601 49.9
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 1.2e-142 511.1 607 48.1
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 5.8e-142 508.8 599 47.2
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 2.2e-141 506.9 603 46.1
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 4.9e-141 505.8 628 44.7
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 1.9e-140 503.8 624 45.0
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 2.4e-140 503.4 623 45.9
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 2.4e-140 503.4 617 46.5
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 1.2e-139 501.1 649 45.8
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.3e-138 497.7 611 48.4
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 5.1e-138 495.7 614 45.8
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 4.3e-137 492.7 667 43.9
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 1.6e-136 490.7 600 45.7
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 3.6e-136 489.6 632 44.6
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 1.4e-135 487.6 655 44.9
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.8e-135 487.3 578 46.9
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 1.5e-134 484.2 650 44.2
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 3.8e-133 479.6 626 43.9
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 1.1e-132 478.0 600 45.3
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 1.1e-132 478.0 600 45.3
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 7.8e-131 471.9 602 43.9
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 2.5e-129 466.8 607 45.5
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 9.6e-129 464.9 625 44.6
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 4.8e-128 462.6 596 43.8
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 4.6e-123 446.0 729 38.0
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 1.8e-119 434.1 285 76.1
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.2e-115 421.4 529 47.3
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 1.6e-115 421.0 475 50.1
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 3.0e-106 390.2 543 43.6
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 8.7e-106 388.7 562 43.2
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 1.9e-105 387.5 599 39.9
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.8e-87 327.8 319 54.2
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 3.1e-87 327.0 811 30.9
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.5e-86 324.7 418 45.7
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.8e-82 311.2 756 29.1
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 3.2e-76 290.4 454 42.5
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 5.5e-76 289.7 336 49.1
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 3.3e-73 280.4 198 67.7
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 1.0e-66 258.8 1007 24.0
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.4e-66 258.5 866 25.6
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.4e-66 258.5 866 25.6
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 3.1e-63 247.3 176 64.2
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 1.6e-62 245.0 212 55.7
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 1.4e-58 231.9 228 51.8
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 4.7e-51 206.8 145 62.1
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 1.5e-49 201.8 177 51.4
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 2.9e-48 197.6 371 36.7
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 6.4e-48 196.4 401 37.7
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 9.8e-41 172.6 124 62.1
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 8.3e-40 169.5 124 61.3
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.9e-39 168.3 145 53.8
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 1.2e-38 165.6 318 40.3
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 4.3e-36 157.1 311 37.3
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 2.6e-33 147.9 220 35.9
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 3.7e-32 144.1 132 54.5
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 3.2e-31 141.0 140 54.3
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 6.0e-30 136.7 77 77.9
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 3.3e-28 131.0 184 39.7
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.6e-27 128.6 81 71.6
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 6.2e-27 126.7 137 46.7
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.1e-26 125.9 80 71.2
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 1.8e-26 125.2 288 35.1
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 8.9e-26 122.9 91 62.6
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 2.0e-25 121.7 68 83.8
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.2e-24 118.2 86 55.8
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.4e-23 115.5 94 62.8
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 9.6e-20 102.8 68 58.8
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 2.1e-19 101.7 92 45.7
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 6.2e-19 100.1 69 69.6
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.1e-18 99.4 71 62.0
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.8e-18 98.6 198 34.8
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 7.6e-17 93.2 63 69.8
Pp3c12_23820 Physcomitrium patens HOM05D005255 ORTHO05D006276 3.8e-16 90.9 75 54.7
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 6.4e-16 90.1 59 64.4
SEGI_33554 Sequoiadendron giganteum HOM05D002556 ORTHO05D003153 1.1e-15 89.4 201 26.9
Mapoly0107s0042 Marchantia polymorpha HOM05D002556 ORTHO05D003153 1.7e-13 82.0 197 27.4
AL6G49810 Arabidopsis lyrata HOM05D002556 ORTHO05D003153 4.3e-12 77.4 265 23.4
BolSC21t60285H Brassica oleracea HOM05D005255 ORTHO05D021741 7.3e-12 76.6 111 40.5
SGA_v2.0_scaffold11G05759 Striga asiatica HOM05D002556 ORTHO05D003153 1.3e-11 75.9 181 28.7
MELO3C034260.2 Cucumis melo HOM05D000018 ORTHO05D001766 4.8e-11 73.9 50 74.0
AT4G03130 Arabidopsis thaliana HOM05D002556 ORTHO05D003153 1.1e-10 72.8 371 22.1
SMO364G0772 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 3.1e-10 71.2 139 34.5
Thecc.01G289800 Theobroma cacao HOM05D002556 ORTHO05D003153 4.4e-09 67.4 384 21.4
C03p67440 Brassica napus HOM05D005255 ORTHO05D021741 4.9e-08 63.9 70 48.6
BcaB04g19772 Brassica carinata HOM05D005255 ORTHO05D021741 8.4e-08 63.2 49 59.2
Sed0003402 Sechium edule HOM05D002556 ORTHO05D003153 1.4e-07 62.4 137 29.2
Migut.M01869 Erythranthe guttata HOM05D000001 ORTHO05D002182 1.9e-07 62.0 143 32.2
Aqoxy1G01057 Aquilegia oxysepala HOM05D001217 ORTHO05D001097 4.2e-07 60.8 117 31.6
C03p67420 Brassica napus HOM05D005255 ORTHO05D021741 7.1e-07 60.1 79 44.3


User provided reference genes

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