Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023786 Sechium edule HOM05D001314 ORTHO05D373341 3.8e-54 214.5 104 100.0
CsaV3_5G033730 Cucumis sativus L. HOM05D001314 ORTHO05D001165 2.1e-25 119.0 106 59.4
MELO3C012189.2 Cucumis melo HOM05D001314 ORTHO05D001165 3.4e-23 111.7 108 57.4
ClCG05G023560 Citrullus lanatus HOM05D001314 ORTHO05D001165 4.8e-17 91.3 108 52.8
CsaV3_5G033750 Cucumis sativus L. HOM05D001314 ORTHO05D001165 6.3e-17 90.9 109 47.7
Sed0021730 Sechium edule HOM05D001314 ORTHO05D001165 2.4e-16 89.0 109 53.2
Sed0015118 Sechium edule HOM05D001314 ORTHO05D001165 3.1e-16 88.6 105 50.5
ClCG05G023280 Citrullus lanatus HOM05D001314 ORTHO05D001165 1.5e-15 86.3 108 50.0
Sed0026309 Sechium edule HOM05D001314 ORTHO05D001165 3.8e-14 81.6 105 45.7
Manes.06G076500 Manihot esculenta HOM05D001314 ORTHO05D001165 6.5e-14 80.9 114 44.7
CsaV3_5G033740 Cucumis sativus L. HOM05D001314 ORTHO05D001165 1.9e-13 79.3 114 43.0
MELO3C012190.2 Cucumis melo HOM05D001314 ORTHO05D001165 2.5e-13 79.0 108 41.7
Haze_11863 Corylus avellana HOM05D001314 ORTHO05D001165 2.1e-12 75.9 113 41.6
Haze_11817 Corylus avellana HOM05D001314 ORTHO05D001165 2.7e-12 75.5 113 40.7
Actinidia17749 Actinidia chinensis HOM05D001314 ORTHO05D001165 4.6e-12 74.7 121 44.6
Sed0008383 Sechium edule HOM05D001314 ORTHO05D001165 7.9e-12 73.9 110 40.9
TWI75G1419 Tripterygium wilfordii HOM05D001314 ORTHO05D001165 1.4e-11 73.2 112 40.2
Manes.14G094500 Manihot esculenta HOM05D001314 ORTHO05D001165 3.9e-11 71.6 115 40.0
TWI75G0753 Tripterygium wilfordii HOM05D001314 ORTHO05D001165 5.1e-11 71.2 114 41.2
Potri.010G133500 Populus trichocarpa HOM05D001314 ORTHO05D001165 6.7e-11 70.9 114 38.6
RhsimUnG0162200 Rhododendron simsii HOM05D001314 ORTHO05D001165 8.8e-11 70.5 117 42.7
Lj3A1023G52 Lonicera japonica HOM05D001314 ORTHO05D001165 1.5e-10 69.7 114 43.9
TWI75G1624 Tripterygium wilfordii HOM05D001314 ORTHO05D001165 1.5e-10 69.7 112 39.3
Sabra08G0083300 Salix brachista HOM05D001314 ORTHO05D001165 2.0e-10 69.3 113 40.7
Eucgr.B03080 Eucalyptus grandis HOM05D001314 ORTHO05D001165 2.5e-10 68.9 111 46.8
Eucgr.B03082 Eucalyptus grandis HOM05D001314 ORTHO05D001165 2.5e-10 68.9 111 46.8
Eucgr.B03079 Eucalyptus grandis HOM05D001314 ORTHO05D001165 3.3e-10 68.6 111 46.8
QL03p041243 Quercus lobata HOM05D001314 ORTHO05D001165 3.3e-10 68.6 114 41.2
Dinv16553 Davidia involucrata HOM05D001314 ORTHO05D001165 4.3e-10 68.2 111 38.7
Migut.E00273 Erythranthe guttata HOM05D001314 ORTHO05D001165 5.7e-10 67.8 113 40.7
Potri.008G109500 Populus trichocarpa HOM05D001314 ORTHO05D001165 5.7e-10 67.8 113 39.8
Potri.T077590 Populus trichocarpa HOM05D001314 ORTHO05D001165 5.7e-10 67.8 113 39.8
Migut.E00274 Erythranthe guttata HOM05D001314 ORTHO05D001165 7.4e-10 67.4 101 44.6
Hma1.2p1_1391F.1_g280100 Hydrangea macrophylla HOM05D001314 ORTHO05D001165 7.4e-10 67.4 114 40.4
Hma1.2p1_1459F.1_g284820 Hydrangea macrophylla HOM05D001314 ORTHO05D001165 7.4e-10 67.4 114 40.4
RhsimUnG0162000 Rhododendron simsii HOM05D001314 ORTHO05D001165 7.4e-10 67.4 115 42.6
Eucgr.B03083 Eucalyptus grandis HOM05D001314 ORTHO05D001165 9.7e-10 67.0 112 42.0
Glyma.02G128800 Glycine max HOM05D001314 ORTHO05D001165 9.7e-10 67.0 114 38.6
MD13G1051900 Malus domestica HOM05D001314 ORTHO05D001165 9.7e-10 67.0 109 41.3
Hma1.2p1_1459F.1_g284860 Hydrangea macrophylla HOM05D001314 ORTHO05D001165 1.3e-09 66.6 114 38.6
Rhsim12G0080000 Rhododendron simsii HOM05D001314 ORTHO05D001165 1.3e-09 66.6 115 40.9
GSVIVG01012026001 Vitis vinifera HOM05D001314 ORTHO05D001165 1.7e-09 66.2 111 39.6
PGR102G3340 Punica granatum HOM05D001314 ORTHO05D001165 2.2e-09 65.9 117 39.3
Atru.chr5.3124 Acer truncatum HOM05D001314 ORTHO05D001165 2.8e-09 65.5 117 37.6
Actinidia17751 Actinidia chinensis HOM05D001314 ORTHO05D001341 2.8e-09 65.5 112 43.8
Hma1.2p1_1424F.1_g282700 Hydrangea macrophylla HOM05D001314 ORTHO05D001165 2.8e-09 65.5 114 38.6
QL03p044392 Quercus lobata HOM05D001314 ORTHO05D001165 2.8e-09 65.5 114 40.4
QL08p021072 Quercus lobata HOM05D001314 ORTHO05D001165 2.8e-09 65.5 112 37.5
GSVIVG01012025001 Vitis vinifera HOM05D001314 ORTHO05D001165 2.8e-09 65.5 111 37.8
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 3.7e-09 65.1 117 37.6
Potri.018G008300 Populus trichocarpa HOM05D001314 ORTHO05D001165 3.7e-09 65.1 114 41.2
CSS0005821 Camellia sinensis var. sinensis HOM05D001314 ORTHO05D001165 4.8e-09 64.7 116 37.9
Dinv27413 Davidia involucrata HOM05D001314 ORTHO05D001165 4.8e-09 64.7 114 39.5
Atru.chr5.3125 Acer truncatum HOM05D001314 ORTHO05D001165 6.3e-09 64.3 117 37.6
Atru.chr5.3126 Acer truncatum HOM05D001314 ORTHO05D001165 6.3e-09 64.3 117 37.6
QL08p021055 Quercus lobata HOM05D001314 ORTHO05D001165 6.3e-09 64.3 112 37.5
Cfa008800 Carpinus fangiana HOM05D001314 ORTHO05D001165 1.1e-08 63.5 113 38.9
HanXRQChr15g0475891 Helianthus annuus HOM05D001314 ORTHO05D001165 1.1e-08 63.5 118 39.8
QL08p021062 Quercus lobata HOM05D001314 ORTHO05D001165 1.1e-08 63.5 112 37.5
RhsimUnG0161900 Rhododendron simsii HOM05D001314 ORTHO05D001165 1.1e-08 63.5 115 40.9
CSS0002740 Camellia sinensis var. sinensis HOM05D001314 ORTHO05D001165 1.4e-08 63.2 116 38.8
Ca_05121_v3 Cicer arietinum L. HOM05D001314 ORTHO05D001165 1.4e-08 63.2 115 38.3
DCAR_023718 Daucus carota HOM05D001314 ORTHO05D001165 1.4e-08 63.2 114 41.2
Prupe.1G300100 Prunus persica HOM05D001314 ORTHO05D001165 1.4e-08 63.2 115 39.1
RhsimUnG0162100 Rhododendron simsii HOM05D001314 ORTHO05D001165 1.4e-08 63.2 117 41.9
Sabra18G0015400 Salix brachista HOM05D001314 ORTHO05D001165 1.4e-08 63.2 114 38.6
Ciclev10031737m.g Citrus clementina HOM05D001314 ORTHO05D001165 1.8e-08 62.8 116 38.8
FvH4_4g28552 Fragaria vesca HOM05D001314 ORTHO05D001165 1.8e-08 62.8 123 35.0
Cc11_g11050 Coffea canephora HOM05D001314 ORTHO05D001165 2.4e-08 62.4 118 39.0
Haze_11865 Corylus avellana HOM05D001314 ORTHO05D001165 2.4e-08 62.4 114 38.6
DCAR_023712 Daucus carota HOM05D001314 ORTHO05D001165 2.4e-08 62.4 114 38.6
Rhsim12G0080200 Rhododendron simsii HOM05D001314 ORTHO05D001165 2.4e-08 62.4 115 40.0
FvH4_4g28550 Fragaria vesca HOM05D001314 ORTHO05D001165 3.1e-08 62.0 123 35.8
Lj2g0013134 Lotus japonicus HOM05D001314 ORTHO05D001165 3.1e-08 62.0 114 40.4
Medtr6g472110 Medicago truncatula HOM05D001314 ORTHO05D001165 3.1e-08 62.0 117 37.6
CANSAT64G0448 Cannabis sativa HOM05D001314 ORTHO05D001165 5.3e-08 61.2 117 40.2
Lalb_Chr17g0341751 Lupinus albus HOM05D001314 ORTHO05D001165 5.3e-08 61.2 117 36.8
Ca_18089_v3 Cicer arietinum L. HOM05D001314 ORTHO05D001165 6.9e-08 60.8 111 34.2
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 6.9e-08 60.8 114 37.7
Phvul.003G034400 Phaseolus vulgaris HOM05D001314 ORTHO05D001165 6.9e-08 60.8 112 37.5
ECA246G1175 Erigeron canadensis HOM05D001314 ORTHO05D001165 9.1e-08 60.5 117 37.6
Hma1.2p1_1424F.1_g282680 Hydrangea macrophylla HOM05D001314 ORTHO05D001165 9.1e-08 60.5 114 38.6
Psat2g096320 Pisum sativum HOM05D001314 ORTHO05D001165 9.1e-08 60.5 118 37.3
Sabra08G0083200 Salix brachista HOM05D001314 ORTHO05D001165 9.1e-08 60.5 113 38.9
vmacro01355 Vaccinium macrocarpon HOM05D001314 ORTHO05D001165 9.1e-08 60.5 114 41.2
Lsat_1_v5_gn_3_58801 Lactuca sativa HOM05D001314 ORTHO05D001165 1.2e-07 60.1 116 41.4
FvH4_4g28553 Fragaria vesca HOM05D001314 ORTHO05D001165 1.5e-07 59.7 119 35.3
MSTRG.13486 Avicennia marina HOM05D001314 ORTHO05D001165 2.0e-07 59.3 116 35.3
DCAR_023716 Daucus carota HOM05D001314 ORTHO05D001165 2.0e-07 59.3 106 41.5
Hma1.2p1_1459F.1_g284880 Hydrangea macrophylla HOM05D001314 ORTHO05D001165 2.6e-07 58.9 114 36.0
Potri.008G109400 Populus trichocarpa HOM05D001314 ORTHO05D001165 2.6e-07 58.9 111 40.5
Potri.T093108 Populus trichocarpa HOM05D001314 ORTHO05D001165 2.6e-07 58.9 111 40.5
Sabra10G0102100 Salix brachista HOM05D001314 ORTHO05D001165 2.6e-07 58.9 115 33.9
CANSAT64G0345 Cannabis sativa HOM05D001314 ORTHO05D001165 3.4e-07 58.5 119 35.3
Hma1.2p1_1424F.1_g282710 Hydrangea macrophylla HOM05D001314 ORTHO05D001165 3.4e-07 58.5 114 36.8
COL.COLO4_27720 Corchorus olitorius HOM05D001314 ORTHO05D001165 4.5e-07 58.2 118 38.1
Prupe.1G300000 Prunus persica HOM05D001314 ORTHO05D001165 4.5e-07 58.2 117 36.8
Sabra08G0083100 Salix brachista HOM05D001314 ORTHO05D001165 4.5e-07 58.2 114 36.8
CANSAT64G1476 Cannabis sativa HOM05D001314 ORTHO05D001165 5.9e-07 57.8 116 36.2
COL.COLO4_27717 Corchorus olitorius HOM05D001314 ORTHO05D001165 5.9e-07 57.8 119 39.5
DCAR_023715 Daucus carota HOM05D001314 ORTHO05D001165 5.9e-07 57.8 115 37.4
Gohir.A13G095045 Gossypium hirsutum HOM05D001314 ORTHO05D001165 5.9e-07 57.8 110 39.1
vmacro01356 Vaccinium macrocarpon HOM05D001314 ORTHO05D001165 5.9e-07 57.8 114 40.4
TPR.G13512 Trifolium pratense HOM05D001314 ORTHO05D001165 7.7e-07 57.4 110 35.5
RcHm_v2.0_Chr4g0436651 Rosa chinensis HOM05D001314 ORTHO05D001165 1.0e-06 57.0 117 36.8
TAR629G3451 Trochodendron aralioides HOM05D001314 ORTHO05D001165 1.0e-06 57.0 115 35.7
Thecc.02G315400 Theobroma cacao HOM05D001314 ORTHO05D001165 1.3e-06 56.6 114 34.2
TAR371G1017 Trochodendron aralioides HOM05D001314 ORTHO05D001165 1.3e-06 56.6 113 36.3
vmacro01350 Vaccinium macrocarpon HOM05D001314 ORTHO05D001165 1.3e-06 56.6 114 39.5
FAN12G2209 Fragaria x ananassa HOM05D001314 ORTHO05D001165 1.7e-06 56.2 119 34.5
Medtr5g035665 Medicago truncatula HOM05D001314 ORTHO05D001165 1.7e-06 56.2 109 35.8
BraA08t35150Z Brassica rapa HOM05D001314 ORTHO05D001165 2.2e-06 55.8 114 32.5
CANSAT64G1122 Cannabis sativa HOM05D001314 ORTHO05D001165 2.2e-06 55.8 120 36.7
Cc11_g11070 Coffea canephora HOM05D001314 ORTHO05D001165 2.2e-06 55.8 114 34.2
Psat2g112080 Pisum sativum HOM05D001314 ORTHO05D001165 2.2e-06 55.8 114 38.6
Sc04g0007030 Simmondsia chinensis HOM05D001314 ORTHO05D001165 2.2e-06 55.8 112 35.7
Medtr5g035750 Medicago truncatula HOM05D001314 ORTHO05D001165 2.9e-06 55.5 109 34.9
MSTRG.13484 Avicennia marina HOM05D001314 ORTHO05D001165 3.8e-06 55.1 91 41.8
AT1G13480 Arabidopsis thaliana HOM05D001314 ORTHO05D001165 5.0e-06 54.7 115 36.5
Ca_18087_v3 Cicer arietinum L. HOM05D001314 ORTHO05D001165 5.0e-06 54.7 114 34.2
CANSAT64G1500 Cannabis sativa HOM05D001314 ORTHO05D001165 6.5e-06 54.3 115 36.5
Lsat_1_v5_gn_3_58781 Lactuca sativa HOM05D001314 ORTHO05D001165 6.5e-06 54.3 119 37.8
MD16G1057900 Malus domestica HOM05D001314 ORTHO05D001165 6.5e-06 54.3 121 37.2
TPR.G13492 Trifolium pratense HOM05D001314 ORTHO05D001165 6.5e-06 54.3 114 33.3
TPR.G39401 Trifolium pratense HOM05D001314 ORTHO05D001165 6.5e-06 54.3 113 34.5
AT1G13500 Arabidopsis thaliana HOM05D001314 ORTHO05D001165 8.5e-06 53.9 116 36.2
A08p32290 Brassica napus HOM05D000557 ORTHO05D000853 8.5e-06 53.9 114 32.5
Cc11_g11060 Coffea canephora HOM05D001314 ORTHO05D001165 8.5e-06 53.9 114 33.3
DCAR_023714 Daucus carota HOM05D001314 ORTHO05D001165 8.5e-06 53.9 115 35.7


User provided reference genes

Program Settings