Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 0.0e+00 1135.2 601 100.0
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.8e-270 935.6 612 82.5
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 7.0e-270 933.7 583 84.9
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 7.3e-251 870.5 598 79.6
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 2.8e-210 735.7 619 66.1
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.4e-206 723.4 617 63.9
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.0e-204 717.2 632 62.0
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 2.3e-204 716.1 630 62.9
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.3e-202 710.3 623 62.8
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 3.7e-202 708.8 629 62.0
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.4e-201 706.1 625 62.9
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 4.1e-201 705.3 604 63.4
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.5e-200 703.4 608 63.5
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 2.0e-200 703.0 628 61.8
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.4e-200 702.2 625 62.2
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 7.6e-200 701.0 625 62.2
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 5.0e-199 698.4 624 61.1
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.1e-198 697.2 620 62.1
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 5.5e-198 694.9 634 61.5
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 9.3e-198 694.1 618 62.8
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.6e-197 693.3 622 61.3
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.3e-196 690.3 597 63.1
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.3e-196 689.5 597 63.0
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 6.7e-196 688.0 628 61.1
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 6.7e-196 688.0 594 63.0
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 7.4e-195 684.5 597 61.5
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.6e-194 683.3 605 60.7
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 2.4e-193 679.5 652 59.5
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.1e-193 678.7 626 60.4
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 5.3e-193 678.3 587 62.2
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 9.1e-193 677.6 628 60.2
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 1.1e-190 670.6 669 56.8
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.5e-190 669.5 600 60.2
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.2e-190 668.7 634 59.0
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.2e-189 667.2 574 62.5
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 2.1e-189 666.4 612 60.9
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 2.7e-189 666.0 592 60.8
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.3e-188 662.9 600 60.3
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 6.7e-188 661.4 599 59.3
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.5e-187 660.2 565 62.7
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 5.7e-187 658.3 601 60.4
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.7e-186 656.8 659 58.1
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.2e-186 656.4 599 59.3
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.2e-186 656.4 589 61.0
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.2e-186 656.4 610 59.7
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 3.1e-185 652.5 582 60.0
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 6.9e-185 651.4 633 57.7
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 2.0e-184 649.8 585 61.2
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.6e-184 649.4 596 58.9
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 4.5e-184 648.7 593 61.0
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 8.5e-183 644.4 600 58.5
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 8.5e-183 644.4 575 61.0
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 1.1e-182 644.0 613 56.6
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.2e-181 640.6 620 57.6
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 6.1e-181 638.3 578 59.7
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 6.1e-181 638.3 595 58.3
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.0e-180 637.5 590 57.8
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.4e-180 637.1 614 58.5
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 2.3e-180 636.3 620 58.4
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 8.8e-180 634.4 614 58.3
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.5e-179 633.6 614 56.5
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.6e-179 632.9 597 58.0
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.7e-178 630.2 594 57.4
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 2.2e-178 629.8 607 57.2
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 2.2e-178 629.8 596 57.4
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.8e-178 629.4 614 57.2
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 2.2e-175 619.8 618 57.6
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 2.9e-175 619.4 601 56.1
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 8.5e-175 617.8 577 56.8
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.5e-174 616.3 599 58.3
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 4.2e-174 615.5 609 55.8
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 4.2e-174 615.5 609 55.8
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 9.4e-174 614.4 599 58.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.6e-173 613.6 584 57.4
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 4.7e-173 612.1 630 57.0
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 6.1e-173 611.7 587 58.6
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.4e-172 610.5 569 58.3
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.4e-172 610.5 570 58.6
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.4e-172 610.5 570 58.6
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.0e-172 609.0 626 56.4
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 2.0e-171 606.7 596 55.4
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.6e-171 606.3 600 54.7
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 2.6e-171 606.3 604 56.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.3e-170 604.0 600 55.3
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.3e-170 604.0 596 54.9
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.7e-170 603.6 632 55.9
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.8e-169 600.1 584 56.7
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.8e-169 600.1 622 56.4
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.0e-167 594.3 581 56.5
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.7e-167 593.6 577 56.3
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 5.0e-167 592.0 577 56.8
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 6.1e-165 585.1 577 56.3
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 5.2e-164 582.0 624 55.0
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.7e-160 569.7 583 55.4
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.1e-158 564.3 625 55.5
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 3.2e-158 562.8 503 61.4
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 3.0e-156 556.2 580 51.0
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 6.8e-156 555.1 616 52.9
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 2.0e-155 553.5 590 52.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 9.8e-155 551.2 606 52.8
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.8e-151 539.3 588 53.1
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 8.0e-149 531.6 581 52.3
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.8e-148 530.4 580 51.0
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 3.2e-145 519.6 545 53.6
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.0e-143 514.6 501 57.7
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 6.8e-140 501.9 581 50.6
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 3.7e-138 496.1 588 52.2
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 8.1e-125 451.8 470 57.7
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.1e-124 451.4 574 45.5
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 6.8e-124 448.7 469 56.5
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 3.9e-119 433.0 591 44.5
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 8.1e-117 425.2 570 46.1
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.1e-116 423.3 624 42.5
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 5.6e-94 349.4 371 56.1
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.1e-92 345.1 540 41.3
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 5.3e-92 342.8 497 45.7
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 2.0e-91 340.9 260 68.1
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.6e-85 321.2 377 51.7
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 1.1e-73 282.0 364 45.1
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 3.0e-71 273.9 332 49.4
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 9.1e-68 262.3 333 47.4
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 9.1e-68 262.3 323 48.9
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.8e-60 238.0 227 56.8
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.0e-58 232.3 308 42.2
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 4.2e-57 226.9 196 58.2
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 8.0e-56 222.6 497 33.4
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 6.7e-55 219.5 225 52.4
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 8.5e-50 202.6 119 85.7
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.2e-49 199.5 235 48.9
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.1e-44 184.1 198 49.5
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 3.1e-44 184.1 157 61.8
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 7.7e-43 179.5 198 45.5
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.0e-42 179.1 112 72.3
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 5.0e-42 176.8 221 44.3
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.1e-40 171.4 161 55.3
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 2.6e-38 164.5 126 68.3
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.5e-35 154.1 305 33.8
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.3e-34 151.4 154 53.9
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 8.6e-34 149.4 180 50.0
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.8e-32 144.4 182 51.1
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.8e-31 141.7 135 55.6
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 1.8e-31 141.7 98 71.4
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.3e-31 141.4 135 54.8
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.5e-30 136.3 145 59.3
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 7.0e-28 129.8 113 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 6.6e-26 123.2 275 33.8
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 3.6e-24 117.5 225 36.4
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 5.8e-22 110.2 87 65.5
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 1.3e-21 109.0 87 65.5
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 2.2e-21 108.2 177 38.4
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 6.0e-19 100.1 175 35.4
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.1e-17 95.9 65 75.4
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.9e-17 95.1 74 67.6
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 5.6e-17 93.6 105 44.8
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.6e-16 92.0 70 64.3
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 2.1e-16 91.7 81 60.5
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 1.1e-15 89.4 141 41.8
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.1e-15 89.4 81 63.0
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.4e-15 89.0 163 35.0
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 1.8e-15 88.6 69 68.1
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 2.8e-08 64.7 49 59.2
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 2.8e-08 64.7 67 52.2
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 2.8e-08 64.7 48 66.7
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.8e-07 62.0 120 36.7
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 3.1e-07 61.2 48 58.3


User provided reference genes

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