Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 4.5e-242 840.9 442 100.0
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 3.6e-170 602.1 403 80.1
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 8.8e-161 570.9 428 74.8
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.8e-159 565.8 414 75.4
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 3.7e-135 485.7 410 66.6
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 3.7e-135 485.7 410 66.6
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.1e-134 484.2 410 64.1
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.1e-134 484.2 410 66.3
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.8e-134 483.4 408 64.7
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 2.3e-132 476.5 409 65.3
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.6e-130 469.2 410 64.1
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 2.3e-129 466.5 402 65.4
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 2.6e-128 463.0 413 62.7
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 3.4e-128 462.6 415 61.7
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 3.4e-128 462.6 400 65.2
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 3.4e-128 462.6 406 63.1
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.2e-127 459.9 398 63.1
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 2.2e-127 459.9 401 63.6
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 3.7e-127 459.1 412 64.3
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 3.7e-127 459.1 419 62.3
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 1.4e-126 457.2 409 63.3
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 5.4e-126 455.3 415 62.4
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.2e-125 454.1 415 62.2
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.2e-125 454.1 410 61.0
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 2.7e-125 453.0 411 61.3
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.7e-125 453.0 402 63.4
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 5.9e-125 451.8 399 63.2
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 2.3e-124 449.9 416 61.3
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 2.9e-124 449.5 413 59.8
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 5.0e-124 448.7 416 59.6
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 4.3e-123 445.7 401 62.6
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 7.3e-123 444.9 416 61.1
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 7.3e-123 444.9 409 60.4
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 1.6e-122 443.7 410 61.0
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.8e-122 443.0 393 60.6
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.8e-122 443.0 411 61.1
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 4.7e-122 442.2 393 60.6
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 4.7e-122 442.2 403 63.3
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 8.0e-122 441.4 412 61.7
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 1.0e-121 441.0 415 62.2
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.0e-121 441.0 384 63.3
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.2e-121 438.7 405 61.0
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 5.2e-121 438.7 410 59.3
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 5.2e-121 438.7 400 60.8
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.8e-121 438.3 397 59.7
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 8.9e-121 438.0 401 61.6
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.0e-120 436.8 446 57.8
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 3.4e-120 436.0 403 62.0
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 4.4e-120 435.6 399 59.1
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 5.8e-120 435.3 392 61.0
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 9.8e-120 434.5 409 60.6
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.9e-119 432.2 413 58.6
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 4.9e-119 432.2 416 60.1
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 8.3e-119 431.4 403 61.8
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.2e-118 427.9 385 60.5
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 3.5e-117 426.0 410 58.3
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 4.6e-117 425.6 384 60.7
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.6e-117 425.6 385 60.3
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.0e-116 424.5 426 56.1
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 3.9e-116 422.5 410 57.8
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.1e-115 421.0 437 54.9
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 8.0e-114 414.8 410 58.0
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.4e-113 414.1 379 63.6
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.3e-113 413.3 380 60.0
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.5e-112 410.6 417 57.8
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 3.4e-112 409.5 503 49.1
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.4e-112 409.1 394 57.6
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 4.4e-112 409.1 361 61.2
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 2.2e-111 406.8 336 67.3
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.7e-111 406.0 412 54.6
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.9e-110 403.7 400 57.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 6.0e-109 398.7 410 57.3
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.0e-108 397.9 375 63.7
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.3e-108 396.7 375 61.3
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.1e-107 394.4 363 62.0
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.9e-107 393.7 408 56.6
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 2.1e-106 390.2 422 55.7
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 5.2e-105 385.6 400 55.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 2.0e-104 383.6 413 53.5
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.6e-104 383.3 402 56.0
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 7.6e-104 381.7 355 62.0
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 3.2e-102 376.3 405 55.3
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 7.1e-102 375.2 407 53.8
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 9.2e-102 374.8 406 55.7
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.1e-99 367.9 393 56.0
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.6e-98 364.0 501 45.9
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.8e-97 360.5 405 52.6
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 4.9e-95 352.4 406 51.7
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.9e-94 350.5 406 51.5
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 5.4e-94 349.0 404 52.0
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 2.1e-93 347.1 412 51.7
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.1e-93 347.1 413 49.2
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 7.8e-93 345.1 405 51.4
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 1.7e-92 344.0 405 51.1
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 2.3e-92 343.6 408 50.5
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.3e-92 343.6 405 50.4
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 3.3e-91 339.7 432 48.4
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 2.1e-90 337.0 410 49.5
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 1.1e-89 334.7 401 50.6
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.6e-88 330.1 404 50.5
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.7e-87 327.4 404 49.3
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 3.2e-86 323.2 412 50.2
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.7e-85 320.1 404 47.8
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 8.7e-84 315.1 422 46.9
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 8.7e-84 315.1 386 52.6
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 9.0e-81 305.1 292 59.6
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.4e-78 297.7 331 55.3
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.2e-77 294.7 374 51.6
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 1.9e-70 270.8 407 46.2
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.4e-65 254.6 316 48.4
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 3.4e-64 250.0 292 53.1
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 4.2e-62 243.0 330 47.6
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 7.1e-62 242.3 360 45.0
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.3e-62 241.9 351 45.9
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 2.5e-59 233.8 232 55.2
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 3.4e-56 223.4 226 57.5
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 4.5e-56 223.0 447 38.7
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 5.9e-56 222.6 323 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 1.2e-45 188.3 420 35.2
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 2.0e-32 144.4 152 53.9
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 2.0e-32 144.4 152 53.9
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.0e-31 139.8 355 34.1
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 9.4e-30 135.6 130 54.6
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.7e-29 133.3 96 63.5
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.5e-27 125.9 167 49.7
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.2e-24 118.6 146 50.7
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 2.7e-24 117.5 290 32.8
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 4.4e-19 100.1 96 66.7
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.7e-18 98.2 73 78.1
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.4e-17 93.2 158 42.4
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.9e-14 84.7 65 69.2
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 4.7e-13 80.1 131 42.0
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.7e-13 80.1 179 36.9
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.0e-11 74.7 39 69.2
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.4e-11 73.9 103 44.7
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 6.4e-10 69.7 92 45.7
MELO3C030134.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.4e-09 67.8 62 66.1
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 3.2e-09 67.4 84 54.8
MELO3C031967.2 Cucumis melo HOM05D005133 ORTHO05D165940 1.2e-08 65.5 66 65.2
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.0e-07 62.4 42 78.6
MELO3C030860.2 Cucumis melo HOM05D005133 ORTHO05D006685 7.3e-06 56.2 47 72.3


User provided reference genes

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